MmuALTA0000704-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000028794 | A3galt2
Description
alpha 1,3-galactosyltransferase 2 (isoglobotriaosylceramide synthase) [Source:MGI Symbol;Acc:MGI:2685279]
Coordinates
chr4:128762035-128767085:+
Coord C1 exon
chr4:128762035-128762172
Coord A exon
chr4:128766570-128766984
Coord C2 exon
chr4:128766985-128767085
Length
415 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CTGAAGTTTTCTCTTCCCAGATA
3' ss Score
7.24
Exon sequences
Seq C1 exon
GGCCCGGCCTGAAGTCCTGACCTGTACCTCTTGGGGAGCACCAATTATTTGGGATGGCACTTTCGACCCTCATGTAGCCCAGCAAGAGGCGAGACGGCGGAACCTCACCATCGGGCTGACTGTGTTTGCTGTAGGCAG
Seq A exon
ATAACCCTGACTTGGAAAAAAAAATCCCTACCAACCACCAACCACAACAAAACTACTACCATCACAACTAACAACAACAACAACAAAAATCTAAACAGCACAGGCTTGCTTACATCATAGCAGCCTCTGGTCCTGGGACCCCCTTCCACAAGGCTCAGAGTACTTCAGACACCTCCTGAACCCCAAGGGTTGTCCAGCTCAGTACTGCCTGGGTCAGAGGAATCAGGAGTCCATATTCAAGGGAAACAGGGCAGAGCAATGCATCCAGGCAGCTGACAGACAGCATCCAGGCACCCAACAGACAGCTTTCAATCTTTTAATGCACCACCTTAAAGCAGAAGATCTGGGATTGCATGGCATGGTGTGGGCAGGGGTGGAGGATGTCAGAACTGACTCTGGCCTGACTGCCTGGCAG
Seq C2 exon
GTACCTGGAGAAGTACCTGGAACACTTCCTGGTATCGGCAGAGCAGCACTTCATGGTCGGCCAGAACGTGGTGTACTATGTGTTTACGGATCGCCCGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028794-5-6,5-5-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF034148=Glyco_transf_6=FE(15.8=100)
A:
NA
C2:
PF034148=Glyco_transf_6=PD(78.4=99.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCCTGAAGTCCTGACCT
R:
GGGCGATCCGTAAACACATAGT
Band lengths:
230-645
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types