MmuALTA0000704-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000028794 | A3galt2
Description
alpha 1,3-galactosyltransferase 2 (isoglobotriaosylceramide synthase) [Source:MGI Symbol;Acc:MGI:2685279]
Coordinates
chr4:128762035-128767085:+
Coord C1 exon
chr4:128762035-128762172
Coord A exon
NA
Coord C2 exon
chr4:128766985-128767085
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CTGGCCTGACTGCCTGGCAGGTA
3' ss Score
7.25
Exon sequences
Seq C1 exon
GGCCCGGCCTGAAGTCCTGACCTGTACCTCTTGGGGAGCACCAATTATTTGGGATGGCACTTTCGACCCTCATGTAGCCCAGCAAGAGGCGAGACGGCGGAACCTCACCATCGGGCTGACTGTGTTTGCTGTAGGCAG
Seq A exon
NA
Seq C2 exon
GTACCTGGAGAAGTACCTGGAACACTTCCTGGTATCGGCAGAGCAGCACTTCATGGTCGGCCAGAACGTGGTGTACTATGTGTTTACGGATCGCCCGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028794-5-6,5-5-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF034148=Glyco_transf_6=FE(15.8=100)
A:
NA
C2:
PF034148=Glyco_transf_6=PD(78.4=99.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCCTGAAGTCCTGACCT
R:
GGGCGATCCGTAAACACATAGT
Band lengths:
230-645
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types