MmuALTA0000728-3/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000087385 | Frg2f1
Description
FSHD region gene 2 family member 1 [Source:MGI Symbol;Acc:MGI:3035485]
Coordinates
chr4:119533313-119533809:-
Coord C1 exon
chr4:119533741-119533809
Coord A exon
chr4:119533498-119533523
Coord C2 exon
chr4:119533313-119533497
Length
26 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
TGATGACCATTGCTGCTCAGGGT
3' ss Score
3.54
Exon sequences
Seq C1 exon
GCATTGTTTCTACTGATATGAAAATTGCAACCTCCTGGGGCTAGCCACTGCAAGAAGACGTCTTAGCGG
Seq A exon
GGTAAAGGCTGTTCCATCTGCAGCAG
Seq C2 exon
ACCCAGAATGGAAAACATGTGCAGCAAAGCCACAGCAGACCTGGGAAAGACCCAACAAATGAGGACAACCACCCATTGGACCACTGAGAGAGAGCTGAGAGTCACGGCAGCAACGTAACAGAGCTTATACAGACTGTTTCTGAACCCTTTTCTGGAACGTCTTAAAGTGCTGGCATCCTTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000087385-6-7,6-6,6-5-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTAGCCACTGCAAGAAGAC
R:
CAGCTCTCTCTCAGTGGTCCA
Band lengths:
128-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types