MmuALTA0000728-3/3 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000062260 | AA415398
Description
NA
Coordinates
chr4:119205918-119206414:-
Coord C1 exon
chr4:119206346-119206414
Coord A exon
chr4:119206103-119206154
Coord C2 exon
chr4:119205918-119206102
Length
52 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
ATTATGCTGTCCATTCCTAGCTG
3' ss Score
6.74
Exon sequences
Seq C1 exon
GCATTGTTTCTACTGATATGAAAATTGCAACCTCCTGGGGCTAGCCACTGCAAGAAGACGTCTTAGCGG
Seq A exon
CTGTCCTGATGACCATTGCTGCTCAGGGTAAAGGCTGTTCCATCTGCAGCAG
Seq C2 exon
ACCCAGAATGGAAAACATGTGCAGCAAAGCCACAGCAGACCTGGGAAAGACCCAACAAATGAGGACAACCACCCATTGGACCACTGAGAGAGAGCTGAGAGTCACGGCAGCAACGTAACAGAGCTTATACAGACTGTTTCTGAACCCTTTTCTGGAACGTCTTAAAGTGCTGGCATCCTTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062260-4-3,4-2,4-1-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTAGCCACTGCAAGAAGAC
R:
CCGTGACTCTCAGCTCTCTCT
Band lengths:
138-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: