MmuALTA0000758-2/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000035875 | AI182371
Description
expressed sequence AI182371 [Source:MGI Symbol;Acc:MGI:2138853]
Coordinates
chr2:35097888-35101008:-
Coord C1 exon
chr2:35100855-35101008
Coord A exon
chr2:35097940-35098080
Coord C2 exon
chr2:35097888-35097939
Length
141 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
GCCTTTTCCTGTTTCAGCAGATA
3' ss Score
8.18
Exon sequences
Seq C1 exon
GTATTTGTCACAAGTGTGCTGAGCAGTGCCAGAGCATCAGAGCCAATGACCTGAAGAGAAAGCCAAAGGCAATGAGACTCCTGCCTTCTAGCACTAAGCCTGTCTTCACAGGGCCAGGCTCCCATGGCTGAGTCCTCATTCTGCGTTAATTGAA
Seq A exon
ATACATCATTTCAACCCCAATTGTCTTCCGAGTTGGAGCTCCTGAAAATGTTACAGTCCAAGCCCACGGCCATACTGAGGCATTTGACACAACTGTCTCTGTAAAAAGTTATCCTGATGAAAATGTTCGTTACTCTTTCAG
Seq C2 exon
CACTGTTAATTTATCACCAGAAAATAAATTCCAAAACACTGCAATCTTAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035875-2-7,2-6,2-5-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTCACAAGTGTGCTGAGCA
R:
TGTTAAGATTGCAGTGTTTTGGA
Band lengths:
202-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types