RnoALTA0000717-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000022033 | AABR07051507.1
Description
NA
Coordinates
chr3:14288624-14291343:-
Coord C1 exon
chr3:14291255-14291343
Coord A exon
NA
Coord C2 exon
chr3:14288624-14288816
Length
0 bp
Sequences
Splice sites
5' ss Seq
AACGTAAGT
5' ss Score
10.74
3' ss Seq
GCCTTTTCCTGTTTCAGCAGATA
3' ss Score
8.18
Exon sequences
Seq C1 exon
ATGGTTTTGGTACCGTTTCAAGCCCTGGGCTTTTGGGGAACACTTCTGTTTTTGATCTTCCTTGAGCCAAGTTGGGAACAGGAACAAAC
Seq A exon
NA
Seq C2 exon
ATATATCATTTCAACCCCAATTGTCTTCCGAGTTGGAGCTCCTGAAAATGTTACAGTCCAAGCCTATGGCTACACCGAGGCATTTGACACAACCATCTCTGTGAAAAGCTATCCTAATAAAAATGTTAATTACTCTTCGGGCACTGTTGAATTATCACCAGAAAATAAATTCCAAAACTCTGCTATCTTAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022033-0-2,0-1-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGCTTTTGGGGAACACTTC
R:
CAGGAGCTCCAACTCGGAAGA
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]