RnoALTA0000717-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000022033 | AABR07051507.1
Description
NA
Coordinates
chr3:14288624-14291343:-
Coord C1 exon
chr3:14291255-14291343
Coord A exon
chr3:14288817-14288819
Coord C2 exon
chr3:14288624-14288816
Length
3 bp
Sequences
Splice sites
5' ss Seq
AACGTAAGT
5' ss Score
10.74
3' ss Seq
TAAGCCTTTTCCTGTTTCAGCAG
3' ss Score
7.19
Exon sequences
Seq C1 exon
ATGGTTTTGGTACCGTTTCAAGCCCTGGGCTTTTGGGGAACACTTCTGTTTTTGATCTTCCTTGAGCCAAGTTGGGAACAGGAACAAAC
Seq A exon
CAG
Seq C2 exon
ATATATCATTTCAACCCCAATTGTCTTCCGAGTTGGAGCTCCTGAAAATGTTACAGTCCAAGCCTATGGCTACACCGAGGCATTTGACACAACCATCTCTGTGAAAAGCTATCCTAATAAAAATGTTAATTACTCTTCGGGCACTGTTGAATTATCACCAGAAAATAAATTCCAAAACTCTGCTATCTTAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022033-0-2,0-1-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGCTTTTGGGGAACACTTC
R:
CAGGAGCTCCAACTCGGAAGA
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]