MmuALTA0000854-1/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000035722 | Abca7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:MGI Symbol;Acc:MGI:1351646]
Coordinates
chr10:79469881-79470196:+
Coord C1 exon
chr10:79469881-79469973
Coord A exon
NA
Coord C2 exon
chr10:79470069-79470196
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
GCTGGTGCTGGATCCCCAAGCCC
3' ss Score
-0.07
Exon sequences
Seq C1 exon
GTGGGGACTCTAGACCGCAGCTGCACCTTCGCACATGCACTCCACAGCCCCCCACAGGGCCAGAGGCATCAGTTCTGGAGAATGGGGAGCTGG
Seq A exon
NA
Seq C2 exon
CCCCACAGGGCTTGGCACCCAACGCTGCCCAAGTGCAAGGCTGGACACTTACCTGTCAACAGCTCCGGGCTCTGCTCCACAAGCGTTTTCTGCTTGCTCGCCGCAGCCGCCGGGGCCTGTTTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035722-27-30,27-29-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.823 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCGCACATGCACTCCACAG
R:
AAGTGTCCAGCCTTGCACTTG
Band lengths:
117-141
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: