MmuALTA0000920-2/4 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000029802 | Abcg2
Description
ATP-binding cassette, sub-family G (WHITE), member 2 [Source:MGI Symbol;Acc:MGI:1347061]
Coordinates
chr6:58545969-58547102:+
Coord C1 exon
chr6:58545969-58546011
Coord A exon
chr6:58547003-58547032
Coord C2 exon
chr6:58547033-58547102
Length
30 bp
Sequences
Splice sites
5' ss Seq
ACGGTATGA
5' ss Score
8.54
3' ss Seq
TAGGGTGGCTTTTGTGGCAGGCA
3' ss Score
3.09
Exon sequences
Seq C1 exon
TCCCGTCCATCCGTCTGTGGATTTCTTTGCCCTTCATTTCACG
Seq A exon
GCATGGATCCTAGCTGAACTCTTTCTCCAG
Seq C2 exon
TGTACAACATTGCTGCATCTCACTGAGGCCTGACAGTTCTCCTTTTGACACCTCATTACACATAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029802-2-6,2-5,2-4,2-3-2/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCGTCCATCCGTCTGTG
R:
TCTGCTATGTGTAATGAGGTGTCA
Band lengths:
112-142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: