MmuEX0003195 @ mm9
Exon Skipping
Gene
ENSMUSG00000029802 | Abcg2
Description
ATP-binding cassette, sub-family G (WHITE), member 2 [Source:MGI Symbol;Acc:MGI:1347061]
Coordinates
chr6:58534970-58605850:+
Coord C1 exon
chr6:58534970-58535054
Coord A exon
chr6:58600455-58600537
Coord C2 exon
chr6:58605632-58605850
Length
83 bp
Sequences
Splice sites
3' ss Seq
AAACTCTTCTCCCTTCTCAGGTT
3' ss Score
9.76
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
GAATCACACGAATGGAAGCCAGGTTCCAGCAAGGACCCATTCTTGGAGTCCAGACACCCTGATGTTACCTTCTCTGCTGATGTTG
Seq A exon
GTTGAATATTTGGAGACATGTGAACTGAATTGAGAAGAACCAGACCAATAAGGGAAATTTTAACTGCACATTGAGAGAAAACT
Seq C2 exon
AAAGGCATAAATCCTAAAGATGTCTTCCAGTAATGACCACGTGTTAGTACCAATGTCGCAGAGAAACAACAACGGCCTTCCTAGGATGAACTCCAGAGCCGTTAGGACGCTCGCAGAAGGAGATGTGTTGAGTTTTCATCACATCACCTATCGAGTGAAAGTAAAGAGTGGGTTTCTAGTCCGGAAAACAGTTGAGAAAGAAATACTATCAGATATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029802_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.343
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0000522=ABC_tran=PU(2.6=6.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACGAATGGAAGCCAGGTTC
R:
TCATCCTAGGAAGGCCGTTGT
Band lengths:
169-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: