MmuALTA0000951-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000026596 | Abl2
Description
v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene) [Source:MGI Symbol;Acc:MGI:87860]
Coordinates
chr1:156640439-156641229:+
Coord C1 exon
chr1:156640439-156640612
Coord A exon
chr1:156640993-156640995
Coord C2 exon
chr1:156640996-156641229
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
TTTGATTGGCCATTTCTCAGCAG
3' ss Score
1.33
Exon sequences
Seq C1 exon
AGGTAGCTGAGGAGCTTGGGAGAACGGCCTCCTCCTCCTCTGTGGTTCCATACCTGCCTCGGTTACCGCTGCTTCCTTCCAAGACGAGGACCCTGAGGAAGCAGGGGGAGAACAAAGAGAACCTAGATGGGGGCCTTGATGCCGCCGAGAGCCTGGCCTCCAGCTCAGCACCAG
Seq A exon
CAG
Seq C2 exon
GGTTCATTAGAAGCACACAGGCCTCCAGTGGGTCCCCAGCTCTGCCTCGAAAGCAAAGAGATAAGTCGCCCAGCAGCCTCTTAGAAGATGCCAAAGAGACATGCTTTACCAGGGATAGGAAGGGGGGCTTCTTCAGCTCCTTCATGAAAAAGAGGAACGCCCCCACGCCCCCGAAGCGCAGCAGCTCCTTTCGAGAAATGGAGAATCAGCCCCACAAGAAATATGAACTCACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026596-18-21,18-20-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.559 A=NA C2=0.781
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF089195=F_actin_bind=WD(100=18.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGCAGGGGGAGAACAAAG
R:
TGGAGGCCTGTGTGCTTCTAA
Band lengths:
105-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types