Special

MmuALTA0000951-2/2 @ mm9

Alternative 3'ss

Gene
ENSMUSG00000026596 | Abl2
Description
v-abl Abelson murine leukemia viral oncogene homolog 2 (arg, Abelson-related gene) [Source:MGI Symbol;Acc:MGI:87860]
Coordinates
chr1:158570570-158571360:+
Coord C1 exon
chr1:158570570-158570743
Coord A exon
chr1:158571124-158571126
Coord C2 exon
chr1:158571127-158571360
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
TTTGATTGGCCATTTCTCAGCAG
3' ss Score
1.33
Exon sequences
Seq C1 exon
AGGTAGCTGAGGAGCTTGGGAGAACGGCCTCCTCCTCCTCTGTGGTTCCATACCTGCCTCGGTTACCGCTGCTTCCTTCCAAGACGAGGACCCTGAGGAAGCAGGGGGAGAACAAAGAGAACCTAGATGGGGGCCTTGATGCCGCCGAGAGCCTGGCCTCCAGCTCAGCACCAG
Seq A exon
CAG
Seq C2 exon
GGTTCATTAGAAGCACACAGGCCTCCAGTGGGTCCCCAGCTCTGCCTCGAAAGCAAAGAGATAAGTCGCCCAGCAGCCTCTTAGAAGATGCCAAAGAGACATGCTTTACCAGGGATAGGAAGGGGGGCTTCTTCAGCTCCTTCATGAAAAAGAGGAACGCCCCCACGCCCCCGAAGCGCAGCAGCTCCTTTCGAGAAATGGAGAATCAGCCCCACAAGAAATATGAACTCACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026596-13-13,13-12-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact





	

	
Protein isoform when splice site is used (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.559 A=NA C2=0.781
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NA

							
C2:
PF089195=F_actin_bind=WD(100=18.1)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000027888





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000126181
          









    
Other Skipping Isoforms:
NA
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr1:179078580-179078581 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr16:61899719-61899720 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
chr8:6540168-6540169 
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
GGAAGCAGGGGGAGAACAAAG

				
R: 
TGGAGGCCTGTGTGCTTCTAA

				
Band lengths: 
105-108

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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