Special

MmuALTA0001114-2/3 @ mm9

Alternative 3'ss

Gene
ENSMUSG00000000530 | Acvrl1
Description
activin A receptor, type II-like 1 [Source:MGI Symbol;Acc:MGI:1338946]
Coordinates
chr15:100959358-100965125:+
Coord C1 exon
chr15:100959358-100959494
Coord A exon
chr15:100965076-100965106
Coord C2 exon
chr15:100965107-100965125
Length
31 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
ACAGCTATCACGTTTTGCAGATC
3' ss Score
6.73
Exon sequences
Seq C1 exon
CCCCTTCCCAGTCCCCGGAGGCCGCCGCGCCAGCCGCGCAGATCGAGACCTTTCCCGGCCCCACAGGCCGGCTCTGGACGTGAGACCCCGGCCGCCTCCGGCAAGGAGAGGCGGGGGTCGAGTCGCCCTGTCCAAAG
Seq A exon
ATCTCACCACATCTCTTCTCCTATCTCCAAG
Seq C2 exon
GACCATGACCTTGGGGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000530-1-10,1-9,1-8-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact





	

	
5' UTR





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=NA A=NA C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NA

							
A:
NA

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000113505





     
                   









    
Main Skipping Isoform:
ENSMUSP00000113297





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000114027, ENSMUSP00000122998
          









    
Other Skipping Isoforms:
ENSMUSP00000000542, ENSMUSP00000112490, ENSMUSP00000113536, ENSMUSP00000114829, ENSMUSP00000115241, ENSMUSP00000129438
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr12:52306219-52306220 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr5:28106759-28106760 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
GCGCAGATCGAGACCTTTCC

				
R: 
GCTCCCCAAGGTCATGGTC

				
Band lengths: 
121-152

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"