MmuINT0010631 @ mm9
Intron Retention
Gene
ENSMUSG00000000530 | Acvrl1
Description
activin A receptor, type II-like 1 [Source:MGI Symbol;Acc:MGI:1338946]
Coordinates
chr15:100959358-100965174:+
Coord C1 exon
chr15:100959358-100959494
Coord A exon
chr15:100959495-100965037
Coord C2 exon
chr15:100965038-100965174
Length
5543 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
ACAGTGATTTCCTCTGGTAGGAG
3' ss Score
5.63
Exon sequences
Seq C1 exon
CCCCTTCCCAGTCCCCGGAGGCCGCCGCGCCAGCCGCGCAGATCGAGACCTTTCCCGGCCCCACAGGCCGGCTCTGGACGTGAGACCCCGGCCGCCTCCGGCAAGGAGAGGCGGGGGTCGAGTCGCCCTGTCCAAAG
Seq A exon
GTGAGTCGGAGTGCCGCTGGGCCGGGCAGGGAGACCTGTCCCTGGTCTCAGGGGGACCCTTCTTTATGTGGATCTCAAAGACCTCTCAGACGGCGCGTGGCAGGGTCAGTTTTAGCCGGGCAAGACAGTCAGCAGTCCCCTGGTTGTGGACACACACCTCCCTGCTACCCCGACCTGAGCGTGGAAGGGGGCGGGTCGAGCACGGATGGGGAATCAAAAAACTTTTTTTGCTAGGTATCCTGAGGCCTTTAGCTTCTCTTCCCTGCCGAGATTAACTCTTCTACCCTTATCTATAAAGGTAAAACGGGACTGAAAGATTCTTCCCTCCTGAGCTCCAGGGTGCTCTGTTGACATAGGAGCGACTTCCCTTGCGGAACCTCCTCATAGAGACCACTTAACCTGGCACCCCAATCCTTATCTCTATAGGGTCACAGAATTCCCCTGCCGTGGGTGTCCTTGACATTCCCCTTTAGGGACTCCTGGCCCTCCCCCAGGCTGAGATCCAGGCAGTCAGTCAGCCCTGCAGAGAACAGCTCTGCTTTCTTAGGTCTTCCTTTGAAGGACACATTCCCCTGCTCACGAGCAACTTCTGGATGAGTTCGGCCCCCTCTCTGACCCTCCAGGGTCAGTCTGTCTAGGGGGTCTGTCTAGGGTCTTTCCTCTCTGGATCCTCACCACTCTAGCTGGCCCCCCACCTGTCTTCACAATTATCCTTCTTTGTTGTGGGTGGTTTTGCTCACACAGCCTATCAGATGGGAGATAACTGTGCCCAGCTTGTGGAAGAGAGGTCAGCTTCAGGCTTTGGATGACTCTGAGAAGGGTGTCAGTCAATGACATCAGGAGACACCATGGTTGGGAGGTTTTTTGTTTGTGTTTGTTTGTTTGTTTGTTTTTGATACAGAGCTGGCCTCAGATTTTCAGTCCACCTGATTCAGCTTTAGTCTCTTTCCTGCCCTGCCTCAGGAGGCTTCTGAGTGCTGGGATACAGGTCAGTGCCGGCACATCTGGCTGCCGAGGGCTTGCTCCGTGCCACTTGCCACACAGTTGAGTAACTCTCGTGGGTCTCACCTGGGAAATGGTACTCTTCTTATGCCAATCTCCAAGCTGTGAGACGTAGCTGCCACAGACCACCCTAGCTAGGTATGGGGGTCCCTGGGATGTGGGTTCTCGAGGCTAGGTAGGTAAGGATTTGGCGGTGACAAACAGAAACAAACACAGAGGCCAGGAACAATACTCAATACTGCCAGGAACATGCCTGTTCCTGGACTGTGAATGTCCCATGATTCTTACCTCCTCGCCATCTTAACTCGATGTGTCTCTGTGGAGGAGTCTGCAGCACTCTGACGAGGTCCTCTCCTTACCTGAGAAAGTATTTTTTTTTTTTTTAGAAAAAGGATAGAGAAAGCTTACCTGCCTCGAGCCCCACATTGAACCCCAGCTTCCACGGACCACCCCAGTCGGGTGCTTGCTCAGGGCCAGTGTGTTGGTCTGTGTGCTGTATAGGAGTCTCTCCTTTCTGCAGCTTCCCGGTCAGAGATCTTAGTCACTTACAATTAACTGTGGTGTGAAAACAGTCAATGGGAATTTCCAGAACTAGGGAAGATATATATTTATATATATATATATATGTATATATATATATATATATATATATAATTTAAATCCATACTGTCTCCAGAATGTAGCGAAGTCTCACCTCCCCTCACCTCATCGGTCATATGAATCATCTCTTTGTCCAGTACATCTATACTGTACACTTTACCTGTCAGTCACCTAGTAGCTGTCAGGGTTATCAGATTGATCGAGAAACCTTTATTTTAGTCAACCATGGTCTCAATTGCAAGCTCAGGGGTGCTGGTGACTCAGTACACCAAGGAGAAGCTTTATAATGCTCCCTTTAAGTAAAAAGACAGAGGTCCTGGCTATAGCATATTACTATGGGTATTGTAATTTCTTACTAATGTTGCTGTCTCCTGGGTCTAATATACAAACTAGACTTTATTACAGGTATGTTATAGGTAGAGGGGACAGGACATGCAGTTTGGGTTTCATGCACCCAATGTGATTCAGGGATTCATCACCGTCAGATGAGGGGGAACCATTGTGCCGTACTGCTTACAGAGGCTTAAGACTCTAAAATCCAGGCTGTTCCATCCTATTCTACCACTATAGACTTAAAGGAATATGCAGGTGAATACCGAGACTGGCTGCGTCCAAGAGGCCAGTAAGTGCACAGCTGTGGAAGATAGCTGAGTTTCCACTGTGCTTCCCTACCTTAGGATAATCACAGTGTGGCAGAGCCCTACTGCTGATAGAAACAGGAAGACTGACAGCCACCATCCAGGCTCACTCCTCTCTGGGTCCTCACCTGACCCTCAGAAGGTGACTGAGAAGAAGTCTGGCAATGAGTAGGTGGTTTCCGGGCAACAATATTTGGAGGAGGGCAGCAGTCACTGACACCACCAGGGGGGCGTGTTGTTAATGTCTGCAGAGACCAGGACCCCTTTTGCCTCTTTGAGGGCCTCACCAAACTCTAGAGGAAGAGCAGTGATTGAGGAAGGATTAGTTGTTGGCCACTTACGTTTAGCGCCACGCCATATTTAGCACTGCTTCCTGTAGGAGTGTTGCGAGGCTCCAAGGAGACAAGCCCCTGCGGTTCAGTGCCTGGTGCAGAGTGAGACCTTAGGGCACCCTGCCTGCCATGACTTCCCTGCGTTAAGTTGGTCTTTGAAAGCCGCTTAACATCTGGGTGATGTTTAACAACAGCGGTGACGCTTCTGTGTGCAGGAGATTTTTTTCCTGTGCTTTTACTAAGGAGGAAAGGAGACGCTTAAGACCGAGATTTACTCCCACGCCCACCTCATGCTCAACCCCAGATAGGACGAGGTTAGCTCCGTCTGTCACAGCCCCGGGGCTGCACCAGGGTGACTTCTGCTAACCTTTCCCTACGCTGCTGATGTTTAGAGATGCTTTTCACCCACCTCCATATTCACGCTCGATTTGCGGTGTCACCAACTCCCTGATCCTATAACATTCTCTTTCTTCCCGCAGACATAGGGAGGCACCGGGAAAGGAACTAAGAGTCCCTTCCATCTCTCCATCCATCTAGCGATGCCCCATGAACAAAAGCACAGGAGACAGGTTTGGCTCAGTGCCAGACACATTTCTCAAAGCCTGGTGCCCACCCCAATGGATCAGAATTCCCTGGGGAGACCATTTACAATACATGCCTTCCCTTCCTCCTTTCCTTCCTTCCTTCCTTCCTTCCTTTCTTTTTTTTTTTTTTATCCCCTTCATTTTTGACTTCTGGAGTCATATCTTGTTACATAACTGAGGCTGGCCCCAGCATCTTAGATCTTCACTTGGTATTCCCAAATCTCCGGCCTCCACAGTGCTGGATCACAGGCATGCACTACTTACTGTACCCCAACCCAGTATGTTTCTTGCTCGTCTCAGACAGACTGAATGGAAGCCTGGAATGGCTGACAGACCAAGGGATCTACCTAGCTAACCCACTGCATGGGGTTCCAATACACAGAAAGGAGGCAAGTTGGGGAGGTGGAAGCTTGATAATATGTCCCAGAAAGATGTCTTGTTGCTAACTAGCTGACTCCCATCTCAGGTAAAGTCTGCCAATAATGGCTTCCTGCCCCAAAGCCTTGGAACATGCCCTGTCTGCATTTATCCACAAAAGCCCTTCGGAGTCCTAACTGGCTACTAGCTGGGGCAAGAGGCAGGAGGTCAGGCAGAAGCTGGGACACAGCTGCGGCAGTGCAGGTCTCTATTTCCTTCCCTGGACCGGGCCTCTGGGTAGAGGAAACCCAGGCAGGAAGGCCAGAGCCTCCACTAGAAAGCTTCACCAAGACCCTCAGCCTGACCCTAGACATCCTGCCCCCAAAAGCCTCAGCATCTTGGGTCTTCGTTCAGTACCAAGCTTAGAGCACAGGCCTCTGTTGCATAACCAGTCCTTCCAGCCTACCGGTGTCTTCTCACATGTGTTGGCTCCCTCACTGGGGATCCAGCCTGCACACCCTGCCATTCAGAAAGTCTGTGTTCCTGTTTGACCCCGGTCCCTCTTGCTACAGGCTCAGCACTGTCTTCTGGCTCTGAGGCTTTGAGAAGGGAAGGGTGGTATAGCTTCTGAAACGATAGCTGATTTGGGCCCCGGGTTGAGGGCTATCACATCATACCAGAATCATGACTCTTACCAGTGCCCATCACACTTCTGGAAGAACAAAACCCTAGGCAAGAGTGAAGCCCAGGCAACTCTCTGAGGTCAAACACTCAGTGTCTAAGTATGTTTCACTTCCTGTACTACTGGCCCTCCCCCCAGCCCTTTCCCAGGACAATGAGAAGAGAGAAGGGGGCCCAGATGGCTTTGAAGGAGAAACAGACCTTTTATACGATGTGCTATAAGCCTGGGGATGCAGGTAGGGACTGACCCCACCCGCTCAGGACACAGAGAAGAAAGACCAGTTTGGGGAGATGGAGTCTAGAGAGGGTATAGCATTCACTCTGTAACCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGTGCCACCACTGCCCGTCTGGGGGCTAGACTCTTGTGTTAGACTCCTGTTACTAATGGAATCTGACAAGCCTCCCCTGGATGAGGCTTACTCTCTCCTTTAAGACCAGAGCTGCAGGGGAGGGCCACGAAGAGATGATACAGCAGGTAATGATGCTTGCTACGTAAGCTGGGTGACCTGAGTTCGATCTCCAGCGCCCACGTAAAGGCAGAAGGAGAAAAACAGCTGCACAGAATTATCTCTGACTTTCACACTTGTACCTTAGCACGAAGACCCTTACAGACAGACCCAATAATAATGAATACATTTAAAACAACAAAACCCCCCAGAGCTGTGTAAGGTACCTACACAAACGTCACACAGTTGTCTCTGCTCCTGGTGGTCCCTTTAAACCCCCGTCCCGCTTCCAGCCTGCCCTGAGCTCCCTGCTGTGCGTGACTTCAGCCTGTTCTATCCAGGCCTCAATCTAAACAATCTTGATTCCTGTTGCCGGCCTGGCGGGACCCTGAATGGCAGGAAGTAAGGACAAGAGCCTGTTTATGTTTGAAGCAGCCAGGCTGGGGGTGGGGAGTGGGGGCACTGGGAAACGGTGGGCAGGGGTGGAGGCTGGAGCGATGGGCAAACGGCTGAGGACAAGAGATGAGCTATGAGAGAGTCGTCCTTCCCACTGTAGCTCTGTCTGTCTGCAACCCTCCCGGCCTATTACCCTCTGAACAGTTGCAGTGGGCACAGAGCCCCGGTCCTCTCTGGCTCTCTTCATTTAAACACAGTTCTCCACCCTTTACCCCCAACAGATGGTTTCCATGGGGAAGTGAACCAGGACTTCCCTTGCAGGCCCCGCCCTAAAGTCAGACGTAGGAGTTGGGAGGTGGCTTCCCTGCCTCCCCCCACCCCCCAAAAAAAACCTCACAGTGATTTCCTCTGGTAG
Seq C2 exon
GAGGAGACCTTGGTCACCACAGCTATCACGTTTTGCAGATCTCACCACATCTCTTCTCCTATCTCCAAGGACCATGACCTTGGGGAGCTTCAGAAGGGGCCTTTTGATGCTGTCGGTGGCCTTTGGCCTAACCAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000530-Acvrl1:NM_009612:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: