RnoINT0012801 @ rn6
Intron Retention
Gene
ENSRNOG00000028713 | Acvrl1
Description
activin A receptor like type 1 [Source:RGD Symbol;Acc:2029]
Coordinates
chr7:142776252-142776840:+
Coord C1 exon
chr7:142776252-142776316
Coord A exon
chr7:142776317-142776700
Coord C2 exon
chr7:142776701-142776840
Length
384 bp
Sequences
Splice sites
5' ss Seq
GAAGTGAGG
5' ss Score
3.71
3' ss Seq
TGGTGATTTCCTCCTGGTAGGAG
3' ss Score
6.32
Exon sequences
Seq C1 exon
CCAGACTTCAATCTAAACAATCTTGATTCCTGTAGCCGGCCTGGCGGGACCCTGAATGGCAGGAA
Seq A exon
GTGAGGACGGGACCTGTTTATGTTTGAAGCAGCCTGGCTTTGGGAGGGGGGGGGGCACTGGGAAAGGGTGGGCAGGGTGATGGGCAAATGACTGAGGACAAGAGACGAGCTATAAGAGAGACGTTCTTCCGCTGTAGCTCTGTCGGTCTGCAACCCTCCCGGCCTGATCCCCTCTAAACTCAGCAGTGGGAGCAGAGCCATGGTCCTCTCTGGCTCTCTTCTAAACATAGCTCTCCACCCCTTACCCCCAGCAGACGGTTTCCATGGGGAAGTGAACCGGGACTTCCCTTGCAAGCCACGCCCTGAAACCAGACGTAGGAGTTGGGAGGTGGCTTCTCTGCCTCCCCCCCACAAAAAAACCTCTTGGTGATTTCCTCCTGGTAG
Seq C2 exon
GAGGAGACCTTGGTCACCACAGCTATCACAGTTTGCAGATCTCGTCACATCTCTTCTCCTCCTATCTCCAAGGACCATGACCCTGGGGATTTTCCGAAGGGTCTTTTTGATGCTGTCGGTGGCCTTGGGCCTAACTAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028713:ENSRNOT00000008673:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGACTTCAATCTAAACAATCTTGA
R:
AGGCCACCGACAGCATCAAAA
Band lengths:
190-574
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]