RnoEX0006483 @ rn6
Exon Skipping
Gene
ENSRNOG00000028713 | Acvrl1
Description
activin A receptor like type 1 [Source:RGD Symbol;Acc:2029]
Coordinates
chr7:142775002-142776840:+
Coord C1 exon
chr7:142775002-142775292
Coord A exon
chr7:142776143-142776316
Coord C2 exon
chr7:142776701-142776840
Length
174 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTAAATCCGAGCTG
3' ss Score
2.57
5' ss Seq
GAAGTGAGG
5' ss Score
3.71
Exon sequences
Seq C1 exon
GACACTCCACATGTTGGTTCCTGAGCTGAGGATCTAGCCTGCACACCCTGCTATTCGGAAAGTCTGTGTTCCCGTCTGACCGAGGCTCCTCTTGCTACAGGCTCAGCACTTGTCTGCTGGCTCTGGGGCTGTGAGAAGGGAAGAGTGGTGCAGCTTCTGAAGCAGTAGTTGGTTTGGGTCCTGAGTTGAGGACTGTCATCTCCCAGAGTCACGTCTCTCACCAGCGTCCGTCAAACTTCTGGAAGAGTGAAACCCCAGGCAACTCTTCGAGGTCAAACACTCAGTGTCTAA
Seq A exon
CTGGGGTTGATGGTGCATAGGGTACCCACACAGACTTCACGCGGTCGTCTCGGCTCCAGGTTGCCCCTACCCTGAGCTCCCGGCTGTGCGTGACTCCAGCGTGTTCTATCCAGACTTCAATCTAAACAATCTTGATTCCTGTAGCCGGCCTGGCGGGACCCTGAATGGCAGGAA
Seq C2 exon
GAGGAGACCTTGGTCACCACAGCTATCACAGTTTGCAGATCTCGTCACATCTCTTCTCCTCCTATCTCCAAGGACCATGACCCTGGGGATTTTCCGAAGGGTCTTTTTGATGCTGTCGGTGGCCTTGGGCCTAACTAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028713_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGAAGGGAAGAGTGGTGCA
R:
CGGAAAATCCCCAGGGTCATG
Band lengths:
256-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]