MmuEX0003680 @ mm10
Exon Skipping
Gene
ENSMUSG00000000530 | Acvrl1
Description
activin A receptor, type II-like 1 [Source:MGI Symbol;Acc:MGI:1338946]
Coordinates
chr15:101128927-101134743:+
Coord C1 exon
chr15:101128927-101129063
Coord A exon
chr15:101134137-101134197
Coord C2 exon
chr15:101134645-101134743
Length
61 bp
Sequences
Splice sites
3' ss Seq
CTTCAGCCTGTTCTATCCAGGCC
3' ss Score
5.29
5' ss Seq
GAAGTAAGG
5' ss Score
6.38
Exon sequences
Seq C1 exon
CCCCTTCCCAGTCCCCGGAGGCCGCCGCGCCAGCCGCGCAGATCGAGACCTTTCCCGGCCCCACAGGCCGGCTCTGGACGTGAGACCCCGGCCGCCTCCGGCAAGGAGAGGCGGGGGTCGAGTCGCCCTGTCCAAAG
Seq A exon
GCCTCAATCTAAACAATCTTGATTCCTGTTGCCGGCCTGGCGGGACCCTGAATGGCAGGAA
Seq C2 exon
ATCTCACCACATCTCTTCTCCTATCTCCAAGGACCATGACCTTGGGGAGCTTCAGAAGGGGCCTTTTGATGCTGTCGGTGGCCTTTGGCCTAACCAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000530_MULTIEX1-4/4=1-C2
Average complexity
C1
Mappability confidence:
80%=80=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCGAGACCTTTCCCGGC
R:
CTCCCCAAGGTCATGGTCCTT
Band lengths:
147-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types