MmuEX0003680 @ mm9
Exon Skipping
Gene
ENSMUSG00000000530 | Acvrl1
Description
activin A receptor, type II-like 1 [Source:MGI Symbol;Acc:MGI:1338946]
Coordinates
chr15:100959358-100965174:+
Coord C1 exon
chr15:100959358-100959494
Coord A exon
chr15:100964568-100964628
Coord C2 exon
chr15:100965076-100965174
Length
61 bp
Sequences
Splice sites
3' ss Seq
CTTCAGCCTGTTCTATCCAGGCC
3' ss Score
5.29
5' ss Seq
GAAGTAAGG
5' ss Score
6.38
Exon sequences
Seq C1 exon
CCCCTTCCCAGTCCCCGGAGGCCGCCGCGCCAGCCGCGCAGATCGAGACCTTTCCCGGCCCCACAGGCCGGCTCTGGACGTGAGACCCCGGCCGCCTCCGGCAAGGAGAGGCGGGGGTCGAGTCGCCCTGTCCAAAG
Seq A exon
GCCTCAATCTAAACAATCTTGATTCCTGTTGCCGGCCTGGCGGGACCCTGAATGGCAGGAA
Seq C2 exon
ATCTCACCACATCTCTTCTCCTATCTCCAAGGACCATGACCTTGGGGAGCTTCAGAAGGGGCCTTTTGATGCTGTCGGTGGCCTTTGGCCTAACCAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000530_MULTIEX1-4/4=1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCGAGACCTTTCCCGGC
R:
CTCCCCAAGGTCATGGTCCTT
Band lengths:
147-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: