HsaINT1002721 @ hg38
Intron Retention
Gene
ENSG00000139567 | ACVRL1
Description
activin A receptor like type 1 [Source:HGNC Symbol;Acc:HGNC:175]
Coordinates
chr12:51907418-51912535:+
Coord C1 exon
chr12:51907418-51907695
Coord A exon
chr12:51907696-51912469
Coord C2 exon
chr12:51912470-51912535
Length
4774 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TCTCTTGCTCCTCTCTGCAGGGA
3' ss Score
11.82
Exon sequences
Seq C1 exon
AGGAAACGGTTTATTAGGAGGGAGTGGTGGAGCTGGGCCAGGCAGGAAGACGCTGGAATAAGAAACATTTTTGCTCCAGCCCCCATCCCAGTCCCGGGAGGCTGCCGCGCCAGCTGCGCCGAGCGAGCCCCTCCCCGGCTCCAGCCCGGTCCGGGGCCGCGCCCGGACCCCAGCCCGCCGTCCAGCGCTGGCGGTGCAACTGCGGCCGCGCGGTGGAGGGGAGGTGGCCCCGGTCCGCCGAAGGCTAGCGCCCCGCCACCCGCAGAGCGGGCCCAGAG
Seq A exon
GTGAGTCGAGGTCCGCGGACGGGACCGGGTGGCGGGCGGCCTGACCCCCGCTTCAGTGGGCCCTTCCTTCGGGCGGACCCCAGAGTCACCGCAGAGTGGTCGCGGGAGGCTCAGTCCCAGCTCATTAGAAAGGCAAGCTGCTCCTGGCTGACCACGCACAGCTCCCATGACCCTACCTGAGACTTGGAGGGGAATGGACGAGACTGGACTGGAAATCAGAAACTTGGTTCTAGTCGGGTGACCTGGGGTCAGTGACTTCACTTCTCTGTTCTCCTACCCTCTTCATAAAATGGGCAGTGGGATTCCTGTCTTGCTCTACTCACATAGAAGGGATCACACGTCCTCCAGGCCGCTGGGTGGACCTGGAGTGAATGCCTACTTCCACAGCTGTTGAGCCTCCCAGCAGAGCTCACCTTTCCCAGATCAGTCCTTCCAGCTGTTGCTTGAGGAATCTGACACTATCACTCCAACCTAGGAGTCTCACCCTAGGCGCGCATGGTCAGTCACCTCCTTGCCACGACCTTCCTTCAGGATCCAGGCCAAAGGGGATCCCAGTCTCCCCCCAGGCTGGGACCCCAGATTTTTCCATGGAGGCCAGTGCTGTGAAACCCATGGCTGGGCTGGCTGCCCCAGCTCCTCTTTCCTTCTCCAAGGACAGGGGCATAATGGACAGTTGCTCTCACTCTCTCTATGTATGGCCAGCTTCTGGCTGAGTCAGGGTCTGTCCTAATACCTGTCCTCTCACCTGTCCCCCCATTTCATTGGTTTGTTAGAAATAGCTACCATTGATTGAGTACTAACTATGTAGACACTTAGATATATATATTTTTTCTCATGTAATCCTGGCCGCAACCTAGTGGAAGAGGGGTTACTATCCCCTTCCTACAGAAAAGGAAACAGACATGAATATGGGACTTGTCCAAAACTCCTTGGATGGTGGGGTGAATGGCATGGTTGGGGTCTTGATAACATTTCAGTGCTTACTGTGTACTACTTATACTCTGCTAAATAATTGTACTACATTTTACCTATGAGATAACACTATTATTATTCCCACTTTACATATGATGGGAAGCCTAAGCCTCAGAAAGTTTAAGTAACGTCTCAAATTTCATACCTCTAAGTGGCAAAGGCAGGATTTGAACCCAGGTCTCCATGCTCCAGAGCCCACACCCTAACCTCTGTGCTACACTGTGCTGCCTCCATGGTCTGCCTGAGACCTGAAAATCCAGGCATCACCTGGATGTTCCACTGCATCACCCCGCTGTGAAGGGCTAATAAATCACATGGATGAATCGTAAGGGCAACCCAATATGAACAGCTGGGTCTGCTCCTCTGCTGTTGGGGTAAGGCCTACTGAAGTGCAGAGTGAGTCCAGAAGGTTGTGCTTGATATGGCGCTTCTCCAGCCCTGTGAAGATCACTGCTGTGCTGAGCCACTGCCGTTGATGGGAGTAGGTTTTATCAATCCTTCAGGTGTGCTAGGGAGAAAAACATTGATAAGCACCTTTCGGGCATACCACTACTCTGGCTCTCCCCACCTGAGGCTCAGACTTTGACTAAGCCTATGGCAAACAGATGATTTCTGGGCAGCAACACCACCTTTGTTGCCTGGGTCAACATAGTGAGACCCTATCTCTACTAAAAATAAAACTGGGCATGGTGCTGCACCCCTGTAGTCCCTTGGGACTTGGGAGGCTGAGGTGGGAGGATCACTTGAGCCCAGGAGTTCAAGGCTACAGTGAGCTATGATTGCACCACTGCACTCCAGCCTGGGCGACTGAGCAAGACCCTGTCTCAAAAAAAATTAAAAACAAACAAAAACGCTGTCTTCATTTAAACAAATCTGAGTAGGGCACCCGTTAATAACAACAGTAGTGGGCAATTTGTACACGTCCACCGAGACCCATGTCTTTTTCTTCCTTTGAGGGACTCATCTAACCCCAAACAACTGGAGGAATAACAATGACCAAGGAATGATTTATTATCAGCAATTTAAGTTTATTAAGACACGCTCAGTGACTATGGACAAGAAACTGAACATCTCTGAGCCTCACTTTCCCCCGTTGGACTGTTGTGATGATTAAATCAGATAAACCATTCAAGTTCAGTACTTAGCACATAATTAGTACTCAGAGAAGGTTAACTGTTATTATTAAGTATTTCATAGTGTTTAGCTAACGTTTGAAATTAGTTTAACGTCTGTAATTTCTGGCCAACAATAGTGATGCTTCTGTCAGCAGGAGATCTTTCACAAAGTTTTGCTTAGAAGTGAAAGGATCCTGCCAGGCCCCAGGAGTCTGTCTGTGCTACAGTCAGATTTCAGGGTAAATCGTACAGAGTCAGCTCTGAGTTTGGACTGGTCGGGACTCAGCATCCTCCTGTACTTGATCTCACACTGGGTCCAGTTAAAAATTGGACAGTCCCAATTTTACTCCATCACATTCCCAGGATTAGACCATAGATGGGTTCTGCAGATGCAGACAGCCTCGCTCCACAGTGTCACCACGTCCCAGCTTTGGTGTTTACCCTTGGCTGTCCCTTCTGTAGTAGATGGGGAGTATCCTGGGTGGGAGTGAGTGTCCCCTCCCTCTGCATCCCACTCCCACTCACCCAGCAGGGCCCTGTACAGCAAAATGAAAGCAGAGGAACCAGACTTAGCGTTGTGCCCACACAAACTGATCAGAACTCCCTGGGGAACTTTTAAAAAATGCATGTTTCTTGCTGATTCCAGGACTGAATCAGAGTCTGGAGTGAGGGTGAAACCAGTGAATATGCTTTTCTCAGTGAGCACTTCAGGTGATTCTGATGCGTGATAAAGTAGAAGGAGGGTGGACTGGGGCACGGCCAGAGAAGTAGAGGTACGGACAGAGGATCCTAGAGGAATGCCGGATTTTAGCCTTATTGTTAGCCACTTTTTCCTTTCCACCTCAAACCCTCTCCTTTGCAGCTTTCTGGGCTAGCAAAGGCTGCCAAGGATGGCTTCCTGCTAGTACCCCAGTGGGCAGATTCAGCTCCTCTAGGGTGCTCTCTCCATCCCATCCCACCGTCAGTCCTGCCGCACAGTGCTAGCCAGAGTCCTCACTGGCTGCGGGAGGGGCAAGAGGCAGGAGGTCAGGCAGAGGCTGGGGACACAGCTGCAGCAGCCCAGGGCTCTGTTTCCTCCCCCAGCCTGGGCCTCTGGGGCAGAGGAAGCCCAGGCAGGAAGGCCAGGCCTGCCACCAGCCAGAGAGGCCTATGAAGCCCCCCTACCCCACCCCTAGCCATACTGCCCTCAGAGCCTCAGCATCTTGGGTCTTCATTTGGCACCATTCTTAGACTATGGGCTTTCTGAAGCCTCTGTGGCCATGTGCCCAGCCCTGTCAGGCTCACCATGTCATGCCAAAGGACAGTCTCCCTGCCTTGTGCCCTGCCTGAGGATCCAGTCCCCAGACACACACCTGCACATGCTCCACCATTCAGAAAGTCCTGTTGCTGTCTGACCAGGGTCCTTCTTGCTGCAGCTTTAGCCAATATCTTCTGGTTCTAAACCTGTGAGAAATGAAGACTGGGTGGCTTCAGAAGCACTAGTTGGTGTGGGACCTGGATTGGGGACTATCATAGACCAGAATTACTCCCCCTAACACTCTCCAACAAACTTCTGGAAAAGTTCAACCCTAGTCAGCCATGGAAGGTCAAACATTCAGTGTCTAAGTGTGTTTCACTTCCCCTGCCACATCACTGGCCCTCCACCCACCCTTTCCTAGATGGCAAGGGGAAAGAAGGGGGCCAGGGAACAGCTCCGAGAGGGCAGCTTATACTCTGGTGAGCTTGCAGAGAGGTTTCTCTACACCTGGCATGACCCTGCCCCGTCCGAGCTTTGCATGGTTGTTATAGCCCTGAGGGCTCAGACATGGGCTGCCACCACTGGATAGGGACAGAGCGAAGAGAGCACTTGATTAGGAGTCTGGAAACCTGGGATGTACGCCTGCTGGTGCCAGTGAGTCCTGTCTGACCCGGGACAAGTCTTCTTCCCTGTATGAGCCTTACTCCTCTCTTCTGTAAAACAAGGAGCTGGATTTTGTGATTCACAGGATGTCCACCTAGAATTCTGTCATGTGGGTGTCCCAGGCACAAGGAACTAAGGGTAGCAAGGAACTAAGGGCATATTTAAAAAGCCCCTCCAGACCTTGTGGCTGCTGCAGCCCACCCTGAAAATATGCCCTCAGTTCCCTGCTGTGCGTGACTCCTGCCTGTTCTATCCAGACCCCAATCTAAACAATCTTGATTCCTGTTCCTGGCTTGGCAGGACCCTGAATGGCAGGAAGCGAAGACAGGAGCCTGTTTATGTTTGAGGCAGCCAGGGCTGGGGGGGCATTGAGAAAGGGTAGGCAGGGGTGGAAGCTGTGAGGGAGTGGGAAAGAGACACAGAACAGAAGGGGAGCTGCTGGAGAGATGCTCCTTCTACCCCAATTGGGTGCTCCCTGCGGCTCTCCCAACCTGCCTGCAGTCTGAGCTCAGCAGCAGGAGTGCAGAGCTAGGGTTTCCCCAAGCTCTCAGTCACTTAAACATTGCTCTCCACCCTTCACCTCTAACAGGATGGTTTCCATGGGGAAGTGAACCAGGACTTCCCCTGCAGGCCCCGCCCCAAAGCCAGGCGGCAGGGAGTAGGGAGGCGGCCTCCCTGCCTCCCCTCCAAAAAAAACTCTGTGATTTCCTCTGGGCAGGAGGGAGCCACGGCCAGCGGCTGTCACACTTCATGGCTCTTACTCCACCTCTCTTGCTCCTCTCTGCAG
Seq C2 exon
GGACCATGACCTTGGGCTCCCCCAGGAAAGGCCTTCTGATGCTGCTGATGGCCTTGGTGACCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000139567:ENST00000388922:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains