Special

MmuALTA0001188-3/5 @ mm10

Alternative 3'ss

Gene
ENSMUSG00000043822 | Adamtsl5
Description
ADAMTS-like 5 [Source:MGI Symbol;Acc:MGI:1913798]
Coordinates
chr10:80342307-80343020:-
Coord C1 exon
chr10:80342909-80343020
Coord A exon
chr10:80342394-80342490
Coord C2 exon
chr10:80342307-80342393
Length
97 bp
Sequences
Splice sites
5' ss Seq
CCGGTGACT
5' ss Score
4.54
3' ss Seq
ACTTCCCCTGTGTACCCCAGTGC
3' ss Score
6.99
Exon sequences
Seq C1 exon
AGCGCAGGCTGTGACGGGATACTGGGCTCCGGCACCCTCGAGGACCGCTGCGGCCTCTGTGGTGGCGCTAACGACTCTTGCCTGTTCGTGCAGCGCGTGTTCCGCGACGCCG
Seq A exon
TGCGTCCCAGTTCATCCCACCACAACGCACCCCTGCACACACCAGCGCATCCCAGAAAATCCTGCCGCGCTACACCGCAACCCTCCGCCTGCCTCAG
Seq C2 exon
GTGCCTTCGCCGGCTTCTGGAATGTGACTTTGATCCCCGAGGGCGCCAGGCACATCCGCGTAGCACAGCGCAGCCACAACCACCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043822-23-26,23-25,23-24,23-23,23-22-3/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact

ORF disruption when splice site is used (sequence inclusion)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):

C1:
PF059869=ADAM_spacer1=PU(8.2=23.7)
A:
NA
C2:
PF059869=ADAM_spacer1=FE(26.4=100)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGCTGTGACGGGATACT
R:
CTGTGCTACGCGGATGTGC
Band lengths:
177-274
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types