MmuALTA0001188-5/5 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000043822 | Adamtsl5
Description
ADAMTS-like 5 [Source:MGI Symbol;Acc:MGI:1913798]
Coordinates
chr10:80342307-80343020:-
Coord C1 exon
chr10:80342909-80343020
Coord A exon
chr10:80342394-80342699
Coord C2 exon
chr10:80342307-80342393
Length
306 bp
Sequences
Splice sites
5' ss Seq
CCGGTGACT
5' ss Score
4.54
3' ss Seq
ATCATCTCATTTATCCGCAGCTA
3' ss Score
9.02
Exon sequences
Seq C1 exon
AGCGCAGGCTGTGACGGGATACTGGGCTCCGGCACCCTCGAGGACCGCTGCGGCCTCTGTGGTGGCGCTAACGACTCTTGCCTGTTCGTGCAGCGCGTGTTCCGCGACGCCG
Seq A exon
CTATCGGTCCCTGAGCACAGTATCGCACCCAAAGTGTACCTTGCCGCTGCGAGCCCCAGAGCATCCCTCCCCTGCGCACCCCAGAGCGTCCCTCGCCTGTGTACCCCAGAGCATCCCTCCCCTGCGCAACCCAGAGCGTCCCTCGCCTGTGTACCCCAGAGTATCCCTGCTCTGCGTACTCCAGAGCATACTTCCCCTGTGTACCCCAGTGCGTCCCAGTTCATCCCACCACAACGCACCCCTGCACACACCAGCGCATCCCAGAAAATCCTGCCGCGCTACACCGCAACCCTCCGCCTGCCTCAG
Seq C2 exon
GTGCCTTCGCCGGCTTCTGGAATGTGACTTTGATCCCCGAGGGCGCCAGGCACATCCGCGTAGCACAGCGCAGCCACAACCACCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043822-23-26,23-25,23-24,23-23,23-22-5/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF059869=ADAM_spacer1=PU(8.2=23.7)
A:
NA
C2:
PF059869=ADAM_spacer1=FE(26.4=100)
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGCTGTGACGGGATACT
R:
CCAGGTGGTTGTGGCTGC
Band lengths:
196-502
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types