Special

MmuALTA0001260-2/2 @ mm9

Alternative 3'ss

Gene
ENSMUSG00000030609 | Aen
Description
apoptosis enhancing nuclease [Source:MGI Symbol;Acc:MGI:1915298]
Coordinates
chr7:86040740-86047527:+
Coord C1 exon
chr7:86040740-86040900
Coord A exon
chr7:86047116-86047229
Coord C2 exon
chr7:86047230-86047527
Length
114 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CCCATGTGCTCTCTCTTCAGCAC
3' ss Score
9.69
Exon sequences
Seq C1 exon
GAGGAGGAGCAGGATCAACCAATCAGAAGAGTCCTTAGGCGGGCGCTACGCCCCAGAGAACCAATAGACAGGTAGCCGAAGCCGGGCTTGTCCGGGCAAGGAGCTTCCGCACCCGGCAAGGGTTCCACGTGAAACCTGGGAAAGCGCGGCCGGGTTTTCAG
Seq A exon
CACACTGCCCCATTGGCAGACAGCCTCCAGAGCTGTTCTTACCCCAACCTGTGAGCTGGCTGACATGGTGGCAGGGGAAGTCCCCGAGTCTACTCAGTGTCCATCTCTCACCAG
Seq C2 exon
CCTGAATACCAAGGATGTGGTTCGGAGAAGACACAAGAGGAGAAGCCGGCAGCACCAGCGATTCATGGCCCGCAAGGCCTTGCTTCAGGAGCAGGAGCTGTTGAGCACGGCACCAGGGCCAGGTCTCTGCCTTCTGCCTTCACCATCACAGATGCCAGCGGTCACAGAGGCTTCGGACAGCAGGAGGCAACGTCCCAAGGCCAGGTCCGGCAGCAATGGCCTGTGCAGCAAAAAGTCTGTCCCCAGAGAAGCTCCAAGACCTGGGCCCATCAAGTGTGTGGCCATTGACTGTGAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030609-0-3,0-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact





	

	
5' UTR





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.545 A=NA C2=0.519
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NA

							
A:
NA

							
C2:
PF0092919=RNase_T=PU(44.2=48.9)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000103046





     
                   









    
Main Skipping Isoform:
ENSMUSP00000103044





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000103048
          









    
Other Skipping Isoforms:
ENSMUSP00000117331
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr15:89169375-89169376 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr21:20002676-20002677 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
ATAGACAGGTAGCCGAAGCCG

				
R: 
GCATCTGTGATGGTGAAGGCA

				
Band lengths: 
253-367

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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