Special

MmuALTA0001565-1/2 @ mm10

Alternative 3'ss

Gene
ENSMUSG00000069601 | Ank3
Description
ankyrin 3, epithelial [Source:MGI Symbol;Acc:MGI:88026]
Coordinates
chr10:69927695-69932496:+
Coord C1 exon
chr10:69927695-69927818
Coord A exon
NA
Coord C2 exon
chr10:69932409-69932496
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
AACAGCCTCCGCTCCTTCAGTTC
3' ss Score
6
Exon sequences
Seq C1 exon
GTGAAGATGCCATCACAGGGGACACTGACAAGTATCTCGGGCCACAGGACCTTAAGGAGCTAGGTGATGACTCCCTGCCAGCAGAAGGTTACGTAGGCTTCAGTCTTGGAGCCCGTTCTGCCAG
Seq A exon
NA
Seq C2 exon
TTCGGATAGGTCCTACACCTTGAACAGAAGCTCCTACGCAAGGGACAGCATGATGATAGAGGAACTTCTGGTACCATCCAAAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000069601-64-82,64-81-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact





	

	
Protein isoform when splice site is used (No Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.381 A=NA C2=0.009
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NA

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000138413





     
                   









    
Main Skipping Isoform:
ENSMUSP00000061698





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000138095, ENSMUSP00000138123, ENSMUSP00000138348, ENSMUSP00000138586, ENSMUSP00000138671, ENSMUSP00000138770
          









    
Other Skipping Isoforms:
ENSMUSP00000090087, ENSMUSP00000090088, ENSMUSP00000090089, ENSMUSP00000090090, ENSMUSP00000138285, ENSMUSP00000138326, ENSMUSP00000138337, ENSMUSP00000138347, ENSMUSP00000138375, ENSMUSP00000138481, ENSMUSP00000138623, ENSMUSP00000138686, ENSMUSP00000151906
  



Associated events







Other assemblies


mm9




Conservation


Human
(hg38)
chr10:60134271-60134358 
ALTERNATIVE
HsaALTA0000434-1/2
(ANK3)
Human
(hg19)
chr10:61894029-61894116 
ALTERNATIVE
HsaALTA0000434-1/2
(ANK3)
Rat
(rn6)
chr20:20385503-20385590 
ALTERNATIVE
RnoALTA0003453-1/2
(Ank3)
Cow
(bosTau6)
chr28:15929831-15929918 
ALTERNATIVE
BtaALTA0002675-1/2
(ANK3)
Chicken
(galGal4)
chr6:8447990-8448077 
ALTERNATIVE
GgaALTA1036476-1/2
(chAnk3)
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
chr12:7658440-7658527 
ALTERNATIVE
DreALTA0004634-1/2
(ank3b)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
CCAGCAGAAGGTTACGTAGGC

				
R: 
ATCATCATGCTGTCCCTTGCG

				
Band lengths: 
104-119

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types





Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"