DreALTA0004634-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000077582 | ank3b
Description
ankyrin 3b [Source:ZFIN;Acc:ZDB-GENE-060621-2]
Coordinates
chr12:7658440-7665541:-
Coord C1 exon
chr12:7665418-7665541
Coord A exon
NA
Coord C2 exon
chr12:7658440-7658527
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
AACAGCCTGCGCTCCTTCAGTTC
3' ss Score
6.12
Exon sequences
Seq C1 exon
GTGAGGATGCGATGACCGGAGACACAGACAAATATCTGGGGCCGCAGGATCTGCGTGAGCTCGGAGACGACTCTCTGCCTCAGGAAGGATATGTTGGATTTAGTGTTGGAGCCCGAACGGCCAG
Seq A exon
NA
Seq C2 exon
TTCGGATAGGTCCAACACTCTCAACCGGAGCTCCTTCGCCCGCGACAGCATGATGATCGAAGAGATCCTGGCGCCCACCAAGGACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077582-35-31,35-30-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.551 A=NA C2=0.208
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGACTCTCTGCCTCAGGAAG
R:
TCGATCATCATGCTGTCGCG
Band lengths:
118-133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]