DreEX0013138 @ danRer10
Exon Skipping
Gene
ENSDARG00000077582 | ank3b
Description
ankyrin 3b [Source:ZFIN;Acc:ZDB-GENE-060621-2]
Coordinates
chr12:7658440-7665541:-
Coord C1 exon
chr12:7665418-7665541
Coord A exon
chr12:7661032-7661043
Coord C2 exon
chr12:7658440-7658542
Length
12 bp
Sequences
Splice sites
3' ss Seq
ATTATAAACCCTCACCATAGTCC
3' ss Score
4.31
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GTGAGGATGCGATGACCGGAGACACAGACAAATATCTGGGGCCGCAGGATCTGCGTGAGCTCGGAGACGACTCTCTGCCTCAGGAAGGATATGTTGGATTTAGTGTTGGAGCCCGAACGGCCAG
Seq A exon
TCCTAAAATCAG
Seq C2 exon
CCTGCGCTCCTTCAGTTCGGATAGGTCCAACACTCTCAACCGGAGCTCCTTCGCCCGCGACAGCATGATGATCGAAGAGATCCTGGCGCCCACCAAGGACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077582-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.551 A=0.400 C2=0.208
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000088100fB1182
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGACTCTCTGCCTCAGGAA
R:
GAGCTCCGGTTGAGAGTGTTG
Band lengths:
107-119
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]