GgaEX0029070 @ galGal3
Exon Skipping
Gene
ENSGALG00000003135 | Q90717_CHICK
Description
NA
Coordinates
chr6:10105883-10108988:+
Coord C1 exon
chr6:10105883-10106006
Coord A exon
chr6:10107725-10107736
Coord C2 exon
chr6:10108886-10108988
Length
12 bp
Sequences
Splice sites
3' ss Seq
TCCACTGTAAATTGCTTTAGTCC
3' ss Score
4.19
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GTGAGGATGCAATGACAGGTGACACGGACAAGTATCTCGGACCCCAGGATCTAAAAGAGTTGGGCGATGATTCTTTGCCTGCTGAAGGCTACATGGGCTTTAGCCTGGGAGCCCGCTCTGCCAG
Seq A exon
TCCAAAAGTCAG
Seq C2 exon
CCTCCGCTCCTTCAGTTCGGATAGGTCCTACACTCTGAACAGAAGTTCTTATGCCCGAGACAGCATGATGATTGAAGAGCTGCTGGTACCAGCGAAGGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003135-MICROEX1
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.429 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGGCGATGATTCTTTGCCT
R:
GACCTATCCGAACTGAAGGAGC
Band lengths:
92-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]