BtaEX0003416 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019052 | ANK3
Description
Bos taurus ankyrin 3, node of Ranvier (ankyrin G) (ANK3), mRNA. [Source:RefSeq mRNA;Acc:NM_001105620]
Coordinates
chr28:15929831-15934874:-
Coord C1 exon
chr28:15934714-15934874
Coord A exon
chr28:15933069-15933080
Coord C2 exon
chr28:15929831-15929933
Length
12 bp
Sequences
Splice sites
3' ss Seq
CTAAAAATACTTAAAAATAGTCC
3' ss Score
0.54
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GAAGCTTCTGATTCGGGCTTGCTTTGTACATCCGCAGGTGAAGATGCAATGACAGGCGACACGGACAAGTATCTTGGGCCACAAGACCTTAAGGAACTGGGCGATGATTCTCTGCCTGCAGAGGGCTACATGGGCTTTAGTCTGGGGGCCCGTTCTGCCAG
Seq A exon
TCCCAAGATCAG
Seq C2 exon
CCTCCGCTCCTTCAGCTCGGATAGGTCTTACACCTTGAACCGAAGCTCCTACGCCCGGGACAGCATGATGATTGAGGAGCTACTGGTGCCATCCAAAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019052-'29-34,'29-33,30-34
Average complexity
C2
Mappability confidence:
100%=100=50%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.545 A=0.000 C2=0.105
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000061228fB556
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGGGCTTTAGTCTGGGGG
R:
CAATCATCATGCTGTCCCGGG
Band lengths:
108-120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development