BtaALTA0002675-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000019052 | ANK3
Description
Bos taurus ankyrin 3, node of Ranvier (ankyrin G) (ANK3), mRNA. [Source:RefSeq mRNA;Acc:NM_001105620]
Coordinates
chr28:15929831-15934874:-
Coord C1 exon
chr28:15934714-15934874
Coord A exon
chr28:15929919-15929933
Coord C2 exon
chr28:15929831-15929918
Length
15 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTT
5' ss Score
7.51
3' ss Seq
GTTAACTGTAACTACAACAGCCT
3' ss Score
2.26
Exon sequences
Seq C1 exon
GAAGCTTCTGATTCGGGCTTGCTTTGTACATCCGCAGGTGAAGATGCAATGACAGGCGACACGGACAAGTATCTTGGGCCACAAGACCTTAAGGAACTGGGCGATGATTCTCTGCCTGCAGAGGGCTACATGGGCTTTAGTCTGGGGGCCCGTTCTGCCAG
Seq A exon
CCTCCGCTCCTTCAG
Seq C2 exon
CTCGGATAGGTCTTACACCTTGAACCGAAGCTCCTACGCCCGGGACAGCATGATGATTGAGGAGCTACTGGTGCCATCCAAAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019052-29-35,29-34-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.545 A=NA C2=0.105
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCTTAAGGAACTGGGCGA
R:
CGTAGGAGCTTCGGTTCAAGG
Band lengths:
116-131
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development