GgaALTA1036476-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000003135 | chAnk3
Description
ankyrin 3, node of Ranvier (ankyrin G) [Source:RefSeq peptide;Acc:NP_001264026]
Coordinates
chr6:8444972-8448077:+
Coord C1 exon
chr6:8444972-8445095
Coord A exon
chr6:8447975-8447989
Coord C2 exon
chr6:8447990-8448077
Length
15 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTG
5' ss Score
8.35
3' ss Seq
ATAAATGGTAAATACAACAGCCT
3' ss Score
-1.29
Exon sequences
Seq C1 exon
GTGAGGATGCAATGACAGGTGACACGGACAAGTATCTCGGACCCCAGGATCTAAAAGAGTTGGGCGATGATTCTTTGCCTGCTGAAGGCTACATGGGCTTTAGCCTGGGAGCCCGCTCTGCCAG
Seq A exon
CCTCCGCTCCTTCAG
Seq C2 exon
TTCGGATAGGTCCTACACTCTGAACAGAAGTTCTTATGCCCGAGACAGCATGATGATTGAAGAGCTGCTGGTACCAGCGAAGGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003135-49-37,49-36-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.476 A=NA C2=0.267
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGCGATGATTCTTTGCCTG
R:
TGCTGTCTCGGGCATAAGAAC
Band lengths:
114-129
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]