GgaEX0029070 @ galGal4
Exon Skipping
Gene
ENSGALG00000003135 | chAnk3
Description
ankyrin 3, node of Ranvier (ankyrin G) [Source:RefSeq peptide;Acc:NP_001264026]
Coordinates
chr6:8444972-8448077:+
Coord C1 exon
chr6:8444972-8445095
Coord A exon
chr6:8446814-8446825
Coord C2 exon
chr6:8447990-8448077
Length
12 bp
Sequences
Splice sites
3' ss Seq
TCCACTGTAAATTGCTTTAGTCC
3' ss Score
4.19
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GTGAGGATGCAATGACAGGTGACACGGACAAGTATCTCGGACCCCAGGATCTAAAAGAGTTGGGCGATGATTCTTTGCCTGCTGAAGGCTACATGGGCTTTAGCCTGGGAGCCCGCTCTGCCAG
Seq A exon
TCCAAAAGTCAG
Seq C2 exon
TTCGGATAGGTCCTACACTCTGAACAGAAGTTCTTATGCCCGAGACAGCATGATGATTGAAGAGCTGCTGGTACCAGCGAAGGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003135-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.476 A=0.400 C2=0.267
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGAAGGCTACATGGGC
R:
AATCATCATGCTGTCTCGGGC
Band lengths:
104-116
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]