Special

MmuEX0004910 @ mm9

Exon Skipping

Gene
ENSMUSG00000069601 | Ank3
Description
ankyrin 3, epithelial [Source:MGI Symbol;Acc:MGI:88026]
Coordinates
chr10:69390443-69395244:+
Coord C1 exon
chr10:69390443-69390566
Coord A exon
chr10:69392195-69392206
Coord C2 exon
chr10:69395142-69395244
Length
12 bp
Sequences
Splice sites
3' ss Seq
CTAAAAATACCTTAAAATAGTCC
3' ss Score
1.11
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTGAAGATGCCATCACAGGGGACACTGACAAGTATCTCGGGCCACAGGACCTTAAGGAGCTAGGTGATGACTCCCTGCCAGCAGAAGGTTACGTAGGCTTCAGTCTTGGAGCCCGTTCTGCCAG
Seq A exon
TCCCAAGATAAG
Seq C2 exon
CCTCCGCTCCTTCAGTTCGGATAGGTCCTACACCTTGAACAGAAGCTCCTACGCAAGGGACAGCATGATGATAGAGGAACTTCTGGTACCATCCAAAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000069601-MICROEX1
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact





	

	
ORF disruption upon sequence inclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.219 A=0.000 C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NO

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000090090f6290A





     
                   









    
Main Skipping Isoform:
ENSMUSP00000090090f5603A





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000061698, ENSMUSP00000090087, ENSMUSP00000090088, ENSMUSP00000090089, ENSMUSP00000090090, ENSMUSP00000090090f5390A, ENSMUSP00000090090f5391A, ENSMUSP00000090090f5392A, ENSMUSP00000090090f5393A, ENSMUSP00000090090f5394A, ENSMUSP00000090090f6291A
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
chr10:60137342-60137353 
ALTERNATIVE
HsaEX0004145
(ANK3)
Human
(hg19)
chr10:61897100-61897111 
ALTERNATIVE
HsaEX0004145
(ANK3)
Rat
(rn6)
chr20:20382470-20382483 
LOW PSI
RnoEX0009381
(Ank3)
Cow
(bosTau6)
chr28:15933069-15933080 
ALTERNATIVE
BtaEX0003416
(ANK3)
Chicken
(galGal4)
chr6:8446814-8446825 
ALTERNATIVE
GgaEX0029070
(chAnk3)
Chicken
(galGal3)
chr6:10107725-10107736 
ALTERNATIVE
GgaEX0029070
(Q90717_CHICK)
Zebrafish
(danRer10)
chr12:7661032-7661043 
ALTERNATIVE
DreEX0013138
(ank3b)
Zebrafish
(danRer10)
chr17:20738845-20738856 
ALTERNATIVE
DreEX0013114
(ank3a)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
CTTCAGTCTTGGAGCCCGTTC

				
R: 
ATCATCATGCTGTCCCTTGCG

				
Band lengths: 
99-111

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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