RnoEX0009381 @ rn6
Exon Skipping
Gene
ENSRNOG00000053288 | Ank3
Description
ankyrin 3 [Source:RGD Symbol;Acc:620157]
Coordinates
chr20:20380700-20385590:+
Coord C1 exon
chr20:20380700-20380823
Coord A exon
chr20:20382470-20382483
Coord C2 exon
chr20:20385488-20385590
Length
14 bp
Sequences
Splice sites
3' ss Seq
CTAAAAATACTTTAAAATAGTCA
3' ss Score
1.02
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTGAAGATGCCATCACAGGGGACACTGACAAGTATCTCGGGCCACAGGACCTCAAGGAGCTGGGCGATGACTCCCTGCCTGCCGAGGGCTATGTGGGCTTCAGTCTCGGAGCCCGTTCTGCCAG
Seq A exon
TCAAGATAAATAAG
Seq C2 exon
CCTTCGCTCCTTCAGTTCGGATAGGTCCTACACCCTGAACAGAAGCTCCTATGCGCGGGACAGCATGATGATCGAGGAGCTTCTGGTGCCATCCAAAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053288-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.470 A=0.750 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000079630fB1069
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTATGTGGGCTTCAGTCTCG
R:
GCGCATAGGAGCTTCTGTTCA
Band lengths:
93-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]