DreEX0013114 @ danRer10
Exon Skipping
Gene
ENSDARG00000061736 | ank3a
Description
ankyrin 3a [Source:ZFIN;Acc:ZDB-GENE-060621-1]
Coordinates
chr17:20731485-20743265:-
Coord C1 exon
chr17:20743142-20743265
Coord A exon
chr17:20738845-20738856
Coord C2 exon
chr17:20731485-20731587
Length
12 bp
Sequences
Splice sites
3' ss Seq
GCTTCTCTCATTCTCTCTAGCCC
3' ss Score
8.9
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTGAAGATGCGATGACCGGAGAGACTGAGAAGTACCTTCGGCCACAGGACCTTAGGGAGTTGGGGGATGATTCCCTGCCGCAGGAGGGGTACATGGGTTTCAGTATTGGAGCCCGCTCTGCCAG
Seq A exon
CCCCAGGATAAG
Seq C2 exon
TCTGCGCTCCTTCAGCTCAGACAGGTCCAACACACTGAACAGAAGCTCCTTCGCTCGGGACAGCATGATGATTGAAGAGATTCTGGCACCCACCAAAGACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061736-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.690 A=1.000 C2=0.455
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTAGGGAGTTGGGGGATG
R:
TGTTGGACCTGTCTGAGCTGA
Band lengths:
108-120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]