DreALTA0004628-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000061736 | ank3a
Description
ankyrin 3a [Source:ZFIN;Acc:ZDB-GENE-060621-1]
Coordinates
chr17:20731485-20743265:-
Coord C1 exon
chr17:20743142-20743265
Coord A exon
chr17:20731573-20731587
Coord C2 exon
chr17:20731485-20731572
Length
15 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATA
5' ss Score
8.55
3' ss Seq
GAACCTCTTACACACTCCAGTCT
3' ss Score
1.6
Exon sequences
Seq C1 exon
GTGAAGATGCGATGACCGGAGAGACTGAGAAGTACCTTCGGCCACAGGACCTTAGGGAGTTGGGGGATGATTCCCTGCCGCAGGAGGGGTACATGGGTTTCAGTATTGGAGCCCGCTCTGCCAG
Seq A exon
TCTGCGCTCCTTCAG
Seq C2 exon
CTCAGACAGGTCCAACACACTGAACAGAAGCTCCTTCGCTCGGGACAGCATGATGATTGAAGAGATTCTGGCACCCACCAAAGACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061736-32-33,32-32-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.690 A=NA C2=0.516
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTTTCAGTATTGGAGCCCG
R:
GTCTTTGGTGGGTGCCAGAAT
Band lengths:
115-130
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]