Special

MmuEX0004914 @ mm9

Exon Skipping

Gene
ENSMUSG00000069601 | Ank3
Description
ankyrin 3, epithelial [Source:MGI Symbol;Acc:MGI:88026]
Coordinates
chr10:69342641-69395244:+
Coord C1 exon
chr10:69342641-69342739
Coord A exon
chr10:69345109-69345306
Coord C2 exon
chr10:69395142-69395244
Length
198 bp
Sequences
Splice sites
3' ss Seq
TGTTTCTACCTTGCATCTAGGAT
3' ss Score
8.58
5' ss Seq
AAGGTATAA
5' ss Score
7.08
Exon sequences
Seq C1 exon
AGAGGAGAGACGGCATTGCATATGGCGGCTCGGTCCGGACAAGCAGAAGTGGTGCGGTATCTGGTCCAAGATGGGGCTCAGGTAGAAGCAAAAGCTAAG
Seq A exon
GATGACCAGACTCCACTCCACATCTCAGCCCGACTTGGGAAAGCTGACATAGTGCAACAACTGTTACAGCAAGGAGCATCCCCCAATGCAGCAACAACTTCTGGGTACACCCCCCTTCACCTTGCGGCCAGAGAGGGGCATGAGGATGTAGCTGCGTTCCTCCTGGATCATGGAGCATCTTTATCCATAACAACAAAG
Seq C2 exon
CCTCCGCTCCTTCAGTTCGGATAGGTCCTACACCTTGAACAGAAGCTCCTACGCAAGGGACAGCATGATGATAGAGGAACTTCTGGTACCATCCAAAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000069601_MULTIEX1-13/25=12-25
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.273 A=0.242 C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF136371=Ank_4=PD(38.9=63.6),PF127962=Ank_2=PU(8.3=18.2)

							
A:
PF127962=Ank_2=PD(88.9=97.0)

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000090090f5603A





     
                   









    
Main Skipping Isoform:
ENSMUSP00000090089





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000061698, ENSMUSP00000090087, ENSMUSP00000090088, ENSMUSP00000090090, ENSMUSP00000090090f5390A, ENSMUSP00000090090f5391A, ENSMUSP00000090090f5392A, ENSMUSP00000090090f5393A, ENSMUSP00000090090f5394A, ENSMUSP00000090090f6290A, ENSMUSP00000090090f6291A
          









    
Other Skipping Isoforms:
NA
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
chr10:60198340-60198537 
HIGH PSI
HsaEX6088517
(ANK3)
Human
(hg19)
chr10:61958098-61958295 
HIGH PSI
HsaEX6088517
(ANK3)
Rat
(rn6)
chr20:20332448-20332645 
Cow
(bosTau6)
chr28:15982745-15982942 
HIGH PSI
BtaEX6105141
(ANK3)
Chicken
(galGal4)
chr6:8415277-8415474 
HIGH PSI
GgaEX6039835
(chAnk3)
Chicken
(galGal3)
chr6:10076187-10076384 
HIGH PSI
GgaEX6039835
(Q90717_CHICK)
Zebrafish
(danRer10)
chr17:20760342-20760539 
HIGH PSI
DreEX0013105
(ank3a)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
AGAGGAGAGACGGCATTGCAT

				
R: 
CTGCTCTTTGGATGGTACCAGA

				
Band lengths: 
202-400

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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