MmuEX0004916 @ mm9
Exon Skipping
Gene
ENSMUSG00000069601 | Ank3
Description
ankyrin 3, epithelial [Source:MGI Symbol;Acc:MGI:88026]
Coordinates
chr10:69347495-69355267:+
Coord C1 exon
chr10:69347495-69347593
Coord A exon
chr10:69347887-69347985
Coord C2 exon
chr10:69355070-69355267
Length
99 bp
Sequences
Splice sites
3' ss Seq
GTCTCTGCACGTGTTTTCAGAGC
3' ss Score
8.54
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
AAGGGATTCACCCCTCTGCACGTGGCAGCCAAATACGGAAAGCTTGAAGTCGCAAGTCTCCTGCTGCAGAAGAGTGCGTCTCCCGATGCCGCAGGGAAG
Seq A exon
AGCGGGCTAACTCCACTGCATGTAGCAGCGCATTACGATAATCAGAAAGTGGCCCTTCTGCTCTTGGACCAGGGAGCCTCACCCCACGCAGCCGCAAAG
Seq C2 exon
AATGGCTATACACCACTGCACATCGCGGCCAAGAAGAACCAGATGGACATAGCCACGTCCCTGCTGGAGTACGGTGCTGATGCAAACGCGGTTACCCGGCAAGGGATTGCGTCCGTCCATCTTGCGGCACAGGAAGGGCACGTGGACATGGTGTCGCTGCTCCTGAGTAGAAACGCGAATGTCAACCTGAGCAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000069601_MULTIEX1-15/25=14-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=0.061 C2=0.015
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(0.1=0.0),PF127962=Ank_2=PU(29.0=81.8)
A:
PF127962=Ank_2=FE(34.4=100)
C2:
PF127962=Ank_2=PD(33.3=47.0),PF127962=Ank_2=PU(29.0=40.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAAGTCGCAAGTCTCCTGC
R:
CAAGATGGACGGACGCAATCC
Band lengths:
180-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: