DreEX0013143 @ danRer10
Exon Skipping
Gene
ENSDARG00000077582 | ank3b
Description
ankyrin 3b [Source:ZFIN;Acc:ZDB-GENE-060621-2]
Coordinates
chr12:7686668-7697223:-
Coord C1 exon
chr12:7697125-7697223
Coord A exon
chr12:7694711-7694809
Coord C2 exon
chr12:7686668-7686865
Length
99 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTGTGCTTTTAGAGT
3' ss Score
9.79
5' ss Seq
AAGGTATCA
5' ss Score
7.22
Exon sequences
Seq C1 exon
AAGGGATTCACTCCACTGCATGTTGCAGCCAAATACGGGAAGATGGAAGTTGCTAACTTACTGCTACAGAAGCGAGCACCGCCTGACGCAGCTGGAAAG
Seq A exon
AGTGGACTAACACCACTGCATGTTGCTGCACACTATGATAACCAGAAAGTGGCTCTTCTTCTGTTGGACCAAGGAGCGTCTCCACATGCAGCAGCAAAG
Seq C2 exon
AATGGCTATACTCCACTGCACATCGCTGCCAAGAAGAACCAGATGGAGATCGCCACCACGCTGCTAGAGTACGGAGCCGATACCAACGCCGCCACACGGCAGGGCATCAGTCCTCTGCATCTGGCAGCACAGGAGGGCAATGTGGACATGGTGACACTGCTGCTCGCCCGCGAAGCTGCCGTCAGTCTGGGAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077582_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=0.121 C2=0.076
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(33.3=93.9)
A:
PF0002325=Ank=WD(100=100.0)
C2:
PF127962=Ank_2=PD(33.3=47.0),PF0002325=Ank=WD(100=50.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGTTGCAGCCAAATACGG
R:
TTGGTATCGGCTCCGTACTCT
Band lengths:
168-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]