GgaEX0004062 @ galGal3
Exon Skipping
Gene
ENSGALG00000003135 | Q90717_CHICK
Description
NA
Coordinates
chr6:10076914-10081325:+
Coord C1 exon
chr6:10076914-10077012
Coord A exon
chr6:10077753-10077851
Coord C2 exon
chr6:10081128-10081325
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTTGTTCTGCATGTTTTTAGAGC
3' ss Score
8.16
5' ss Seq
AAGGTACAA
5' ss Score
6.82
Exon sequences
Seq C1 exon
AAAGGATTTACTCCTCTACACGTGGCTGCAAAATATGGGAAAATCGAGGTAGCAAACCTCCTGCTTCAGAAGAATGCATCTCCTGATGCTTCTGGAAAG
Seq A exon
AGCGGTTTAACACCACTGCATGTAGCTGCACACTACGATAATCAAAAAGTGGCACTCCTACTGTTGGACCAGGGAGCTTCACCTCACGCATCTGCCAAG
Seq C2 exon
AACGGCTATACACCACTACACATAGCTGCCAAGAAAAACCAGATGGACATAGCGACTACACTGCTGGAATATGGTGCTGATGCCAATGCTGTAACCAGACAGGGTATTGCCCCTGTACATCTGGCCTCTCAGGACGGCCACGTGGACATGGTGTCCTTACTTCTTACTAGAAATGCTAATGTAAATCTCAGCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003135_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=0.152 C2=0.061
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(29.0=81.8)
A:
PF127962=Ank_2=FE(34.4=100)
C2:
PF127962=Ank_2=PD(33.3=47.0),PF127962=Ank_2=PU(29.0=40.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTACACGTGGCTGCAAAA
R:
TACAGCATTGGCATCAGCACC
Band lengths:
180-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]