RnoEX0009383 @ rn6
Exon Skipping
Gene
ENSRNOG00000053288 | Ank3
Description
ankyrin 3 [Source:RGD Symbol;Acc:620157]
Coordinates
chr20:20334488-20347779:+
Coord C1 exon
chr20:20334488-20334586
Coord A exon
chr20:20334927-20335025
Coord C2 exon
chr20:20347582-20347779
Length
99 bp
Sequences
Splice sites
3' ss Seq
GTCTCTGCACGTGTTTTCAGAGC
3' ss Score
8.54
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
AAGGGATTCACGCCTCTGCACGTGGCTGCAAAATATGGGAAGCTTGAAGTGGCAAGTCTCCTGCTGCAGAAGAGTGCGTCTCCTGATGCCGCTGGGAAG
Seq A exon
AGCGGGCTAACTCCACTGCATGTAGCAGCACATTACGATAATCAGAAAGTGGCCCTTCTGCTTTTGGACCAGGGAGCCTCACCCCACGCAGCTGCAAAG
Seq C2 exon
AACGGTTATACGCCACTGCACATCGCCGCCAAGAAGAACCAGATGGACATAGCCACGTCCCTGCTGGAGTACGGAGCTGATGCAAACGCCGTTACCCGGCAAGGGATTGCGTCCGTCCACCTTGCAGCGCAGGAAGGGCACGTGGACATGGTGTCGCTGCTCCTCAGTAGAAATGCGAACGTCAACTTGAGCAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053288_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=0.061 C2=0.015
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(29.0=81.8)
A:
PF127962=Ank_2=FE(34.4=100)
C2:
PF127962=Ank_2=PD(33.3=47.0),PF127962=Ank_2=PU(29.0=40.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACGTGGCTGCAAAATATGG
R:
CGTTTGCATCAGCTCCGTACT
Band lengths:
170-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]