BtaEX0003421 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019052 | ANK3
Description
Bos taurus ankyrin 3, node of Ranvier (ankyrin G) (ANK3), mRNA. [Source:RefSeq mRNA;Acc:NM_001105620]
Coordinates
chr28:15973492-15981129:-
Coord C1 exon
chr28:15981031-15981129
Coord A exon
chr28:15980665-15980763
Coord C2 exon
chr28:15973492-15973689
Length
99 bp
Sequences
Splice sites
3' ss Seq
GTTTCTGCACGTGTTTTCAGAGC
3' ss Score
8.06
5' ss Seq
AAGGTACCT
5' ss Score
8.49
Exon sequences
Seq C1 exon
AAAGGATTTACTCCCCTTCATGTGGCAGCAAAATATGGGAAGCTTGAAGTAGCCAATCTCCTGCTGCAGAAAAGTGCATCTCCAGATGCTGCTGGGAAG
Seq A exon
AGCGGGCTAACGCCACTGCATGTAGCTGCACATTATGATAATCAGAAAGTGGCTCTTCTGCTTCTGGACCAAGGAGCCTCACCCCACGCGGCTGCAAAG
Seq C2 exon
AATGGTTATACGCCACTGCACATCGCTGCCAAAAAGAACCAGATGGACATAGCGACGACTCTGCTGGAATATGGTGCTGATGCAAATGCAGTTACCCGGCAAGGAATTGCTTCTGTCCATCTTGCAGCTCAGGAAGGACATGTGGACATGGTGTCACTGCTCCTCAGCAGAAATGCTAATGTGAACTTGAGCAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019052_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=0.061 C2=0.015
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(29.0=81.8)
A:
PF127962=Ank_2=FE(34.4=100)
C2:
PF127962=Ank_2=PD(33.3=47.0),PF127962=Ank_2=PU(29.0=40.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAGCCAATCTCCTGCTGCAG
R:
AGCTGCAAGATGGACAGAAGC
Band lengths:
180-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development