Special

MmuEX0004923 @ mm9

Exon Skipping

Gene
ENSMUSG00000069601 | Ank3
Description
ankyrin 3, epithelial [Source:MGI Symbol;Acc:MGI:88026]
Coordinates
chr10:69366946-69390566:+
Coord C1 exon
chr10:69366946-69367018
Coord A exon
chr10:69367196-69367258
Coord C2 exon
chr10:69390443-69390566
Length
63 bp
Sequences
Splice sites
3' ss Seq
TTATCACTTAAATCATGCAGTAA
3' ss Score
2.31
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
ACCATCACGGAGAAGCACAAAATGAATGTCCCAGAAACGATGAATGAAGTCCTCGATATGTCAGACGATGAAG
Seq A exon
TAAGGAAAGCCAGCGCCCCCGAAAAGCTCAGTGATGGGGAATATATCTCAGACGGTGAAGAAG
Seq C2 exon
GTGAAGATGCCATCACAGGGGACACTGACAAGTATCTCGGGCCACAGGACCTTAAGGAGCTAGGTGATGACTCCCTGCCAGCAGAAGGTTACGTAGGCTTCAGTCTTGGAGCCCGTTCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000069601_MULTIEX1-22/25=21-24
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.945 A=0.793 C2=0.219
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NO

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000090088





     
                   









    
Main Skipping Isoform:
ENSMUSP00000061698





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000090090, ENSMUSP00000090090f5390A, ENSMUSP00000090090f5391A, ENSMUSP00000090090f5392A, ENSMUSP00000090090f5393A, ENSMUSP00000090090f5394A, ENSMUSP00000090090f5603A, ENSMUSP00000090090f6290A, ENSMUSP00000090090f6291A
          









    
Other Skipping Isoforms:
ENSMUSP00000090087
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
chr10:60166591-60166653 
ALTERNATIVE
HsaEX0004153
(ANK3)
Human
(hg19)
chr10:61926349-61926411 
ALTERNATIVE
HsaEX0004153
(ANK3)
Rat
(rn6)
chr20:20358748-20358810 
ALTERNATIVE
RnoEX0009391
(Ank3)
Cow
(bosTau6)
chr28:15991135-15991197 
Chicken
(galGal4)
chr6:8438575-8438637 
ALTERNATIVE
GgaEX0004064
(chAnk3)
Chicken
(galGal3)
chr6:10099485-10099547 
ALTERNATIVE
GgaEX0004064
(Q90717_CHICK)
Zebrafish
(danRer10)
chr12:7675921-7675980 
ALTERNATIVE
DreEX0013142
(ank3b)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
ACCATCACGGAGAAGCACAAA

				
R: 
GGGAGTCATCACCTAGCTCCT

				
Band lengths: 
148-211

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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