DreEX0013142 @ danRer10
Exon Skipping
Gene
ENSDARG00000077582 | ank3b
Description
ankyrin 3b [Source:ZFIN;Acc:ZDB-GENE-060621-2]
Coordinates
chr12:7665418-7676366:-
Coord C1 exon
chr12:7676294-7676366
Coord A exon
chr12:7675921-7675980
Coord C2 exon
chr12:7665418-7665541
Length
60 bp
Sequences
Splice sites
3' ss Seq
TTTTTATTTAAATTACACAGTTC
3' ss Score
5.5
5' ss Seq
AAGGTATCC
5' ss Score
8.33
Exon sequences
Seq C1 exon
ACAGTGACTGAGAAACATAAAATGAATGTTCCGGAAACAATGAACGAGGTCTTGGACATGTCTGATGACGAAG
Seq A exon
TTCGTAGAGCCAATGTGCCTGAAATGCTCATTGAGGACTATATTTCAGATGTTGAAGAAG
Seq C2 exon
GTGAGGATGCGATGACCGGAGACACAGACAAATATCTGGGGCCGCAGGATCTGCGTGAGCTCGGAGACGACTCTCTGCCTCAGGAAGGATATGTTGGATTTAGTGTTGGAGCCCGAACGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077582_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.960 A=0.320 C2=0.551
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGGAAACAATGAACGAGGT
R:
TCCTTCCTGAGGCAGAGAGTC
Band lengths:
133-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]