RnoEX0009391 @ rn6
Exon Skipping
Gene
ENSRNOG00000053288 | Ank3
Description
ankyrin 3 [Source:RGD Symbol;Acc:620157]
Coordinates
chr20:20358505-20380823:+
Coord C1 exon
chr20:20358505-20358577
Coord A exon
chr20:20358748-20358810
Coord C2 exon
chr20:20380700-20380823
Length
63 bp
Sequences
Splice sites
3' ss Seq
TTATCACTTAAATCATGCAGTTG
3' ss Score
3.48
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
ACCATCACGGAGAAGCACAAAATGAATGTCCCAGAAACGATGAATGAAGTCCTCGACATGTCAGACGATGAAG
Seq A exon
TTGGTAAAGCCAGCGCCCCCGAAAAGCTCAGTGATGGGGAATATATCTCAGATGGTGAAGAAG
Seq C2 exon
GTGAAGATGCCATCACAGGGGACACTGACAAGTATCTCGGGCCACAGGACCTCAAGGAGCTGGGCGATGACTCCCTGCCTGCCGAGGGCTATGTGGGCTTCAGTCTCGGAGCCCGTTCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053288_MULTIEX2-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.987 A=1.000 C2=0.470
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCCTCGACATGTCAGACGA
R:
CGAGACTGAAGCCCACATAGC
Band lengths:
134-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]