RnoEX0009367 @ rn6
Exon Skipping
Gene
ENSRNOG00000053288 | Ank3
Description
ankyrin 3 [Source:RGD Symbol;Acc:620157]
Coordinates
chr20:20358748-20373466:+
Coord C1 exon
chr20:20358748-20358810
Coord A exon
chr20:20372284-20372336
Coord C2 exon
chr20:20373413-20373466
Length
53 bp
Sequences
Splice sites
3' ss Seq
CTCTGCAATTGTATGCATAGAGA
3' ss Score
3.58
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
TTGGTAAAGCCAGCGCCCCCGAAAAGCTCAGTGATGGGGAATATATCTCAGATGGTGAAGAAG
Seq A exon
AGAAAAAGATTCCAGCCCAGACGCTGCACGGCTCAACATGAGAGCTCCAGGAG
Seq C2 exon
GTGATAAAAGCACATGGTTCAAAATTCCCAAAGTGCAGGAGGTTTTGGTGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053288-'38-44,'38-43,39-44
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000079630fB1067
Main Skipping Isoform:
ENSRNOT00000079630fB1073
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTAAAGCCAGCGCCCC
R:
TTTTCACCAAAACCTCCTGCACT
Band lengths:
116-169
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]