GgaEX0004064 @ galGal4
Exon Skipping
Gene
ENSGALG00000003135 | chAnk3
Description
ankyrin 3, node of Ranvier (ankyrin G) [Source:RefSeq peptide;Acc:NP_001264026]
Coordinates
chr6:8438300-8445095:+
Coord C1 exon
chr6:8438300-8438372
Coord A exon
chr6:8438575-8438637
Coord C2 exon
chr6:8444972-8445095
Length
63 bp
Sequences
Splice sites
3' ss Seq
TGTTTATTTAAATCATGCAGTTC
3' ss Score
4.82
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
ACTGTTACAGAAAAGCACAAAATGAATGTACCTGAAACCATGAATGAAGTTCTTGATATGTCCGACGATGAAG
Seq A exon
TTCGTAAAGCCAATGCCCCTGAAATACTCAGTGATGCTGAATATTTGTCAGATGTTGAAGAAG
Seq C2 exon
GTGAGGATGCAATGACAGGTGACACGGACAAGTATCTCGGACCCCAGGATCTAAAAGAGTTGGGCGATGATTCTTTGCCTGCTGAAGGCTACATGGGCTTTAGCCTGGGAGCCCGCTCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003135_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.960 A=0.727 C2=0.476
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAAAATGAATGTACCTGAAACCA
R:
CAGGCAAAGAATCATCGCCCA
Band lengths:
140-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]