GgaEX0004064 @ galGal3
Exon Skipping
Gene
ENSGALG00000003135 | Q90717_CHICK
Description
NA
Coordinates
chr6:10099210-10106006:+
Coord C1 exon
chr6:10099210-10099282
Coord A exon
chr6:10099485-10099547
Coord C2 exon
chr6:10105883-10106006
Length
63 bp
Sequences
Splice sites
3' ss Seq
TGTTTATTTAAATCATGCAGTTC
3' ss Score
4.82
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
ACTGTTACAGAAAAGCACAAAATGAATGTACCTGAAACCATGAATGAAGTTCTTGATATGTCCGACGATGAAG
Seq A exon
TTCGTAAAGCCAATGCCCCTGAAATACTCAGTGATGCTGAATATTTGTCAGATGTTGAAGAAG
Seq C2 exon
GTGAGGATGCAATGACAGGTGACACGGACAAGTATCTCGGACCCCAGGATCTAAAAGAGTTGGGCGATGATTCTTTGCCTGCTGAAGGCTACATGGGCTTTAGCCTGGGAGCCCGCTCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003135_CASSETTE2
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.828 A=0.223 C2=0.429
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAAAATGAATGTACCTGAAACCA
R:
CAGGCAAAGAATCATCGCCCA
Band lengths:
140-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]