MmuEX0004919 @ mm9
Exon Skipping
Gene
ENSMUSG00000069601 | Ank3
Description
ankyrin 3, epithelial [Source:MGI Symbol;Acc:MGI:88026]
Coordinates
chr10:69356193-69395244:+
Coord C1 exon
chr10:69356193-69356291
Coord A exon
chr10:69360789-69360887
Coord C2 exon
chr10:69395142-69395244
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTTCTGAAATATAATTACAGATG
3' ss Score
5.2
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
AGCGGTCTCACCCCACTCCACCTGGCTGCTCAAGAAGACCGAGTGAATGTGGCCGAGGTCCTTGTCAACCAGGGGGCCCATGTGGATGCTCAGACAAAG
Seq A exon
ATGGGCTACACCCCGCTCCATGTGGGCTGTCACTATGGAAATATCAAAATAGTCAATTTTCTGCTGCAGCATTCTGCAAAAGTTAATGCCAAGACGAAG
Seq C2 exon
CCTCCGCTCCTTCAGTTCGGATAGGTCCTACACCTTGAACAGAAGCTCCTACGCAAGGGACAGCATGATGATAGAGGAACTTCTGGTACCATCCAAAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000069601_MULTIEX1-18/25=17-25
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.028 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(34.4=100)
A:
PF127962=Ank_2=PD(33.3=93.9),PF127962=Ank_2=PU(6.2=12.1)
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCACCCCACTCCACCTG
R:
ATCATCATGCTGTCCCTTGCG
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types