GgaEX1065944 @ galGal4
Exon Skipping
Gene
ENSGALG00000003135 | chAnk3
Description
ankyrin 3, node of Ranvier (ankyrin G) [Source:RefSeq peptide;Acc:NP_001264026]
Coordinates
chr6:8422370-8434763:+
Coord C1 exon
chr6:8422370-8422468
Coord A exon
chr6:8434477-8434575
Coord C2 exon
chr6:8434665-8434763
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTATGTCCATTCTAGATG
3' ss Score
11.21
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
AGTGGACTGACACCATTGCACTTGGCTGCTCAAGAGGACAGAGTCAATGTAGCAGAGGTTCTTGTTAACCAAGGAGCTGCTGTTGATGCTCAGACAAAG
Seq A exon
ATGGGATATACTCCCTTGCACGTTGGCTGCCACTACGGAAACATAAAGATTGTTAACTTCCTTCTGCAACATTCTGCAAAAATCAATGCCAAAACGAAG
Seq C2 exon
AACGGGTACACACCGCTGCACCAGGCTGCACAGCAGGGGCACACCCACATCATCAACGTTCTGCTCCAGCACGGTGCGGCGCCCAACGAGCTCACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003135-'40-27,'40-26,41-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=0.030 C2=0.273
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(29.0=81.8)
A:
PF127962=Ank_2=PD(33.3=93.9)
C2:
PF127962=Ank_2=PD(33.3=93.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGACTGACACCATTGCACT
R:
GCTGGAGCAGAACGTTGATGA
Band lengths:
168-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]