HsaEX1003661 @ hg38
Exon Skipping
Gene
ENSG00000151150 | ANK3
Description
ankyrin 3 [Source:HGNC Symbol;Acc:HGNC:494]
Coordinates
chr10:60172900-60181427:-
Coord C1 exon
chr10:60181329-60181427
Coord A exon
chr10:60173088-60173186
Coord C2 exon
chr10:60172900-60172998
Length
99 bp
Sequences
Splice sites
3' ss Seq
TAAAAAAATAATAATTACAGATG
3' ss Score
2.87
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
AGCGGCCTGACCCCACTCCATTTGGCTGCTCAAGAAGATCGAGTGAATGTGGCAGAAGTCCTCGTAAACCAAGGGGCTCATGTGGACGCCCAGACAAAG
Seq A exon
ATGGGATACACACCACTGCATGTGGGCTGCCACTATGGAAATATCAAGATTGTTAATTTCCTGCTCCAGCATTCTGCAAAAGTTAATGCCAAAACAAAG
Seq C2 exon
AATGGGTATACGCCATTACATCAAGCAGCACAGCAGGGGCATACGCATATAATAAATGTCTTACTTCAGAACAACGCCTCCCCCAATGAACTCACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151150-'61-55,'61-54,64-55
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.085 A=0.061 C2=0.424
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(44.9=93.9)
A:
PF127962=Ank_2=PD(33.3=93.9)
C2:
PF0002325=Ank=WD(100=100.0)
Main Skipping Isoform:
ENST00000280772fB9305
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACTCCATTTGGCTGCTCAA
R:
GGGAGGCGTTGTTCTGAAGTA
Band lengths:
169-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains