RnoEX0009364 @ rn6
Exon Skipping
Gene
ENSRNOG00000053288 | Ank3
Description
ankyrin 3 [Source:RGD Symbol;Acc:620157]
Coordinates
chr20:20348774-20352523:+
Coord C1 exon
chr20:20348774-20348872
Coord A exon
chr20:20352238-20352336
Coord C2 exon
chr20:20352425-20352523
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTTCTGAAATGTAATTACAGATG
3' ss Score
4.74
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
AGCGGCCTCACCCCACTCCACCTGGCGGCTCAAGAAGACCGAGTGAACGTGGCTGAGGTCCTTGTCAACCAAGGGGCCCACGTGGATGCACAGACAAAG
Seq A exon
ATGGGCTACACGCCGCTCCATGTGGGCTGTCACTATGGAAACATCAAAATAGTCAATTTTCTGCTGCAGCATTCTGCGAAAGTTAATGCCAAGACAAAG
Seq C2 exon
AATGGATACACGCCACTGCACCAGGCAGCCCAGCAGGGCCACACACACATCATCAACGTCCTGCTCCAGAACAACGCTTCCCCCAATGAACTCACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053288-'32-37,'32-36,33-37
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=0.061 C2=0.356
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(34.4=100)
A:
PF127962=Ank_2=PD(33.3=93.9),PF127962=Ank_2=PU(4.8=9.1)
C2:
PF0002325=Ank=WD(100=100.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCTCAAGAAGACCGAGTGA
R:
GAGTTCATTGGGGGAAGCGTT
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]